Browse Element(s) Details


Os.7971.1.S1_x_at

Description gb:AK062414.1
DB_XREF= gi:32972432
TID=Os.7971.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L12 (P0671D01.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F05, full insert sequence.
FL= gb:AK062414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g473309/1150S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os05g493201/1150S ribosomal protein L12-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7971.1.S1_x_at--640--1571Chr01:27368678..27368702 (25 bp)
AGCTCACCTCAACTCCGGAAGCGAG
NONE
Os.7971.1.S1_x_at--121--9711Chr01:27368686..27368710 (25 bp)
TCAACTCCGGAAGCGAGAGCTCACT
NONE
Os.7971.1.S1_x_at--567--2912Chr01:27369158..27369182 (25 bp)
AAGGAGGCCAAGGACCTCATCGAGG
LOC_Os01g47330
Os.7971.1.S1_x_at--285--8691Chr01:27369174..27369198 (25 bp)
TCATCGAGGGCCTCCCCAAGAAGGT
LOC_Os01g47330
Os.7971.1.S1_x_at--217--8411Chr01:27369257..27369281 (25 bp)
GGCGCCAAGGTGTCCATTGCGTGAC
LOC_Os01g47330
Os.7971.1.S1_x_at--724--10311Chr01:27369309..27369333 (25 bp)
TTTCTCACCCTAATCTTGTGTACCA
LOC_Os01g47330
Os.7971.1.S1_x_at--950--3611Chr01:27369323..27369347 (25 bp)
CTTGTGTACCACCTTTGATATTTAC
LOC_Os01g47330
Os.7971.1.S1_x_at--604--2971Chr01:27369348..27369372 (25 bp)
AATGGTTTGTTGTTTCATACTATGA
LOC_Os01g47330
Os.7971.1.S1_x_at--1148--6511Chr01:27369373..27369397 (25 bp)
GATTTCTGTATGTGGATCTGTTAGT
LOC_Os01g47330
Os.7971.1.S1_x_at--417--6511Chr01:27369417..27369441 (25 bp)
GATATCGATGTTCCACGCGCTAAAT
LOC_Os01g47330
Os.7971.1.S1_x_at--571--6691Chr01:27369426..27369450 (25 bp)
GTTCCACGCGCTAAATTGCCAATGT
LOC_Os01g47330
Target Sequence 
AGCTCACCTCAACTCCGGAAGCGAGAGCTCACTCCCCCCATCCCCATGGCTTCCACCGCGCTCACCAACCTGGCCCTCAA
GGAGGCCAAGGACCTCATCGAGGGCCTCCCCAAGAAGGTCAAGGAGGGTGTCAGCAAGGACGAGGCCGAGGATGCCAAGA
AGCAGCTCGAGGAGGTCGGCGCCAAGGTGTCCATTGCGTGACACTAGGTAATTTTAGGACTCCCCTTTTTTTCTCACCCT
AATCTTGTGTACCACCTTTGATATTTACAATGGTTTGTTGTTTCATACTATGAGATTTCTGTATGTGGATCTGTTAGTTC
ACATTCCATCTTGTATTGATATCGATGTTCCACGCGCTAAATTGCCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7971.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis