Browse Element(s) Details


Os.7971.2.S1_s_at

Description gb:AU069792
DB_XREF= gi:5004617
DB_XREF=AU069792
CLONE=E3319_1A
TID=Os.7971.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L12 (P0671D01.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4733011/1150S ribosomal protein L12-2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7971.2.S1_s_at--657--5311Chr01:27369193..27369217 (25 bp)
GAAGGTCAAGGAGGGTGTCAGCAAG
LOC_Os01g47330
Os.7971.2.S1_s_at--110--3931Chr01:27369256..27369280 (25 bp)
CGGCGCCAAGGTGTCCATTGCGTGA
LOC_Os01g47330
Os.7971.2.S1_s_at--824--4171Chr01:27369259..27369283 (25 bp)
CGCCAAGGTGTCCATTGCGTGACAC
LOC_Os01g47330
Os.7971.2.S1_s_at--338--10371Chr01:27369306..27369330 (25 bp)
TTTTTTCTCACCCTAATCTTGTGTA
LOC_Os01g47330
Os.7971.2.S1_s_at--725--10311Chr01:27369309..27369333 (25 bp)
TTTCTCACCCTAATCTTGTGTACCA
LOC_Os01g47330
Os.7971.2.S1_s_at--358--1731Chr01:27369315..27369339 (25 bp)
ACCCTAATCTTGTGTACCACCTTTG
LOC_Os01g47330
Os.7971.2.S1_s_at--115--3071Chr01:27369320..27369344 (25 bp)
AATCTTGTGTACCACCTTTGATATT
LOC_Os01g47330
Os.7971.2.S1_s_at--963--7431Chr01:27369326..27369350 (25 bp)
GTGTACCACCTTTGATATTTACAAT
LOC_Os01g47330
Os.7971.2.S1_s_at--288--4331Chr01:27369331..27369355 (25 bp)
CCACCTTTGATATTTACAATGGTTT
LOC_Os01g47330
Os.7971.2.S1_s_at--261--3211Chr01:27369347..27369371 (25 bp)
CAATGGTTTGTTGTTTCATACTATG
LOC_Os01g47330
Os.7971.2.S1_s_at--747--6831Chr01:27369359..27369383 (25 bp)
GTTTCATACTATGAGATTTCTGTAT
LOC_Os01g47330
Target Sequence 
GAAGGTCAAGGAGGGTGTCAGCAAGGACGAGGCCGAGGATGCCAAGAAGCAGCTCGAGGAGGTCGGCGCCAAGGTGTCCA
TTGCGTGACACTAGGTAATTTTAGGACTCCCCTTTTTTTCTCACCCTAATCTTGTGTACCACCTTTGATATTTACAATGG
TTTGTTGTTTCATACTATGAGATTTCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7971.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis