Browse Element(s) Details


Os.8065.1.S1_at

Description gb:AF375052.1
DB_XREF= gi:14150750
TID=Os.8065.1
CNT=84
FEA=FLmRNA
TIER=FL+Stack
STK=29
UG=Os.8065 (NCBI UniGene Cluster)
DEF=Oryza sativa vacuolar ATPase B subunit mRNA, complete cds.
PROD=vacuolar ATPase B subunit
FL= gb:AK099907.1 gb:AK060816.1 gb:AK064802.1 gb:AF375052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3718011/11Vacuolar ATP synthase subunit B isoform 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37140Os.36149.1.S1_x_at2/116+21935890..21942002expressed protein
LOC_Os06g37140OsAffx.8676.1.S1_at2/116+21935890..21942002expressed protein
LOC_Os06g37150Os.49627.1.S1_at11/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37150Os.49627.2.S1_x_at6/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8065.1.S1_at--598--3771Chr06:21962726..21962832 (25 bp)
CTCTCTTCTGAGGATCTGCTTTATT
LOC_Os06g37180
Os.8065.1.S1_at--680--5531Chr06:21962644..21962668 (25 bp)
GAAACATCTTTCAGTCACTTGACCT
LOC_Os06g37180
Os.8065.1.S1_at--161--851Chr06:21962616..21962640 (25 bp)
ATGGACATTGCTTCGCATATTCCCT
LOC_Os06g37180
Os.8065.1.S1_at--846--6331Chr06:21962537..21962561 (25 bp)
GATGCTACCCACTGATCTATGTTCA
LOC_Os06g37180
Os.8065.1.S1_at--598--2291Chr06:21962504..21962528 (25 bp)
AAATGTTTTCTCTCAAGTGCAGCTT
LOC_Os06g37180
Os.8065.1.S1_at--776--231Chr06:21962433..21962457 (25 bp)
ATATAGTCCGGTCCTATTCTTTCTG
LOC_Os06g37180
Os.8065.1.S1_at--379--3691Chr06:21962420..21962444 (25 bp)
CTATTCTTTCTGTCGGGTGAGCATA
LOC_Os06g37180
Os.8065.1.S1_at--458--6951Chr06:21962387..21962411 (25 bp)
GTAGATCACTTTGTCACGGCAACTT
LOC_Os06g37180
Os.8065.1.S1_at--530--5911Chr06:21962323..21962347 (25 bp)
GAGCTCTTTTTGGTTTTCATTCGCC
LOC_Os06g37180
Os.8065.1.S1_at--214--10731Chr06:21962279..21962303 (25 bp)
TTGTAGGCCAAGATGCTCGAACCTC
LOC_Os06g37180
Os.8065.1.S1_at--1057--2911Chr06:21962245..21962269 (25 bp)
AAGGCACTGGCTGTATCTACTTTTG
LOC_Os06g37180
Target Sequence 
CTCTCTTCTGAGGATCTGCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGAGCATATGATAC
AAGAAACATCTTTCAGTCACTTGACCTAGCATGGACATTGCTTCGCATATTCCCTCGTGAGCTTCTCCATCGTATCCCTG
CGAAGACATTGGATCAGTACTACAGCAGAGATGCTACCCACTGATCTATGTTCAGAAAAATCAAATGTTTTCTCTCAAGT
GCAGCTTGAATAAATTGAAATGTTTGAACTTGTGGCCTTTTTGCTGTAGTTATATATAGTCCGGTCCTATTCTTTCTGTC
GGGTGAGCATAATTCGTTCGTAGATCACTTTGTCACGGCAACTTCTGTAATATTGTGCCATGTATCTTTAAACTTTCACA
CTTGAGCTCTTTTTGGTTTTCATTCGCCAGAATTGTTAGCAAGAGCATTGTAGGCCAAGATGCTCGAACCTCCAACTCTC
CAAGGCACTGGCTGTATCTACTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis