Browse Element(s) Details


Os.8078.1.S1_at

Description gb:AK067605.1
DB_XREF= gi:32977623
TID=Os.8078.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Vacuolar ATP synthase subunit d (P0700A11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full insert sequence.
FL= gb:AK067605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4047011/11Vacuolar ATP synthase subunit d, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40450OsAffx.23607.1.S1_x_at11/111+23162626..23166968expressed protein
LOC_Os01g40460OsAffx.26476.1.S1_x_at11/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.2.S1_x_at4/111+23173674..23176479hypothetical protein
LOC_Os01g40460OsAffx.26476.3.S1_at2/111+23173674..23176479hypothetical protein
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8078.1.S1_at--1153--3951Chr01:23183428..23183452 (25 bp)
CGGAGGCTGTGCTTGTCATTTGAAC
LOC_Os01g40470
Os.8078.1.S1_at--903--5031Chr01:23182857..23182881 (25 bp)
GCAGTTCCACTATGCTGTTTTCTTT
LOC_Os01g40470
Os.8078.1.S1_at--615--10171Chr01:23182786..23182810 (25 bp)
TATCAGAGTGTGTTGCGCAGAATCA
LOC_Os01g40470
Os.8078.1.S1_at--17--5371Chr01:23182761..23182785 (25 bp)
GAAGAACAGGGTCCACGACAGCGTT
LOC_Os01g40470
Os.8078.1.S1_at--592--3351Chr01:23182748..23182772 (25 bp)
CACGACAGCGTTGTGTTCATCTTTT
LOC_Os01g40470
Os.8078.1.S1_at--96--9211Chr01:23182713..23182737 (25 bp)
TGCCACTCCACGGATGGTTGTACAA
LOC_Os01g40470
Os.8078.1.S1_at--83--6311Chr01:23182676..23182700 (25 bp)
GATGATGGCACAATCGGCTGCGATA
LOC_Os01g40470
Os.8078.1.S1_at--1030--5111Chr01:23182644..23182668 (25 bp)
GCACATGACTTATTATGCCCCATTC
LOC_Os01g40470
Os.8078.1.S1_at--1127--2271Chr01:23182515..23182539 (25 bp)
AAATCCTGTCTATTTTGGGAGGCTG
LOC_Os01g40470
Os.8078.1.S1_at--108--2251Chr01:23182435..23182459 (25 bp)
AAATTGCGCCCAACTCTGTTTTGGT
LOC_Os01g40470
Os.8078.1.S1_at--92--8791Chr01:23182419..23182443 (25 bp)
TGTTTTGGTGCATCAGGTTCTGTTC
LOC_Os01g40470
Target Sequence 
CGGAGGCTGTGCTTGTCATTTGAACAGCAGTTCCACTATGCTGTTTTCTTTNGCTTNACATAAGGCTACGGGAGCAGGAG
ATTAGGAACTTGATGTGGATATCAGAGTGTGTTGCGCAGAATCAGAAGAACAGGGTCCACGACAGCGTTGTGTTCATCTT
TTGACCTGCTCCTGCCACTCCACGGATGGTTGTACAAAATGCCAGGTTTGATGATGGCACAATCGGCTGCGATAATTATA
AGCACATGACTTATTATGCCCCATTCATTTCTCTTTCTGCTCTGCTCGAAAGCAAGACCATGAGTGAATGTACTATTGTT
TTACTTTTTGTAGTAAAATAAAGGCTTGATTATCTTGTGGTAAATTGAATAAATCCTGTCTATTTTGGGAGGCTGTAACT
ATCAATATCTAGTGAACATGGAACAGTTTGTTGGCTTATTGCCAACATCCAAATTGCGCCCAACTCTGTTTTGGTGCATC
AGGTTCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis