Browse Element(s) Details


Os.8277.1.S1_at

Description gb:AK069454.1
DB_XREF= gi:32979478
TID=Os.8277.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0451D05.13 (P0451D05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019C07, full insert sequence.
FL= gb:AK069454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41080OsAffx.31069.1.S1_x_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.31069.1.S1_at3/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080OsAffx.17106.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41080Os.53479.1.S1_x_at1/111+23591475..23594547retrotransposon protein, putative, unclassified
LOC_Os01g41090OsAffx.10632.1.S1_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41090OsAffx.20387.1.S1_x_at1/111+23595144..23600262transposon protein, putative, unclassified
LOC_Os01g41100OsAffx.16205.1.S1_at2/111+23602199..23605130hypothetical protein
LOC_Os01g41100OsAffx.25292.1.S1_at1/111+23602199..23605130hypothetical protein
LOC_Os01g41110OsAffx.23616.1.S1_at11/111+23606880..23607718hypothetical protein
LOC_Os01g41110Os.51318.1.S1_x_at1/111+23606880..23607718hypothetical protein
LOC_Os01g41120Os.20265.1.S1_x_at11/111+23612086..23614071retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g41140Os.8277.1.S1_at11/111+23618507..23619509expressed protein
LOC_Os01g41160OsAffx.21400.2.A1_at10/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.48597.1.A1_x_at5/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41160Os.5026.1.S1_at1/111+23627714..23629806FAD dependent oxidoreductase family protein, expressed
LOC_Os01g41170Os.25495.1.S1_at10/111+23638045..23639429expressed protein
LOC_Os01g41180OsAffx.23618.1.S1_x_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41180OsAffx.23618.1.S1_at11/111+23640294..23640716hypothetical protein
LOC_Os01g41190Os.41372.1.S1_at11/111+23643156..23649741expressed protein
LOC_Os01g41190Os.5922.1.S1_at1/111+23643156..23649741expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8277.1.S1_at--1135--7311Chr01:23619049..23619073 (25 bp)
GTGCTACGACGGCTGCAAGACCACG
LOC_Os01g41140
Os.8277.1.S1_at--308--3871Chr01:23618966..23618990 (25 bp)
CTGATGACGTAGACCATGATCCGGA
LOC_Os01g41140
Os.8277.1.S1_at--823--691Chr01:23618915..23618939 (25 bp)
ATGATGACGTAGACCATGATCCGGA
LOC_Os01g41140
Os.8277.1.S1_at--22--8851Chr01:23618899..23618923 (25 bp)
TGATCCGGACCAAGTGTTCGCTAGT
LOC_Os01g41140
Os.8277.1.S1_at--570--9351Chr01:23618882..23618906 (25 bp)
TCGCTAGTCCACCTGACGACATAGA
LOC_Os01g41140
Os.8277.1.S1_at--977--5671Chr01:23618865..23618889 (25 bp)
GACATAGACCGCCATGTATTCGCTG
LOC_Os01g41140
Os.8277.1.S1_at--347--2411Chr01:23618789..23618813 (25 bp)
AAAACTGATCACACAACTTCGCTAC
LOC_Os01g41140
Os.8277.1.S1_at--480--5451Chr01:23618757..23618781 (25 bp)
GAACGAATAATCTAGCGCTGCATGC
LOC_Os01g41140
Os.8277.1.S1_at--1080--7111Chr01:23618696..23618720 (25 bp)
GTCATATGCACTTCTATGTCGCAAT
LOC_Os01g41140
Os.8277.1.S1_at--767--31Chr01:23618601..23618625 (25 bp)
ATTGGTCCACTACTAGACTGCTTGC
LOC_Os01g41140
Os.8277.1.S1_at--104--1271Chr01:23618551..23618575 (25 bp)
AGATATCACTGCTCATTTGTTTTCT
LOC_Os01g41140
Target Sequence 
GTGCTACGACGGCTGCAAGACCACGGCGGCGGCCAGACTGCCGAGGCCTCTCCGCGCCGGCCACTACGTGCTCTCTAGTC
CCCCTGATGACGTAGACCATGATCCGGACCACCGCTACGTGTTCTCTAGCCCCCATGATGACGTAGACCATGATCCGGAC
CAAGTGTTCGCTAGTCCACCTGACGACATAGACCGCCATGTATTCGCTGCTCCTCCTGATGTTCTCGCTGCTCTTCCTGG
TGAGCCGGACCACGCCTGACAAAACTGATCACACAACTTCGCTACCTGCTGCGAACGAATAATCTAGCGCTGCATGCAGC
AGCAGCATGCACACATGTGCACACTAATTATATGTCATATGCACTTCTATGTCGCAATATATGTATATGTTCTCCATGTA
AAGATAGCGTAGTAGCGTGTGAGTGACTGTATGCGTGCAGAAGGCCGGATTGGTCCACTACTAGACTGCTTGCTATCTAT
GTGTAAGCGAAAGTTCAGAGATATCACTGCTCATTTGTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis