Browse Element(s) Details


Os.8307.1.A1_at

Description gb:CA759693
DB_XREF= gi:25803732
DB_XREF=BR060013A20A04.ab1
CLONE=BR060013A20A04.ab1
TID=Os.8307.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8307 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_179230.1 (A.thaliana) dihydrofolate reductase-thymidylate synthase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g293908/11Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8307.1.A1_at--798--9731Chr11:16557827..16558149 (25 bp)
TAATTTGGTGGCTAAGCTGGGACCC
LOC_Os11g29390
Os.8307.1.A1_at--1040--7291Chr11:16558236..16558260 (25 bp)
GTGCTGGATGTTCATTTGGACCTAT
LOC_Os11g29390
Os.8307.1.A1_at--81--10131Chr11:16558258..16558282 (25 bp)
TATGTTCTCCATTTATCCGCGATTG
LOC_Os11g29390
Os.8307.1.A1_at--851--11Chr11:16558279..16558303 (25 bp)
ATTGTACTTTTATCTCGGTCGCCGA
LOC_Os11g29390
Os.8307.1.A1_at--840--831Chr11:16558432..16558456 (25 bp)
ATGGATGTCATGTACCCTGACTGCG
LOC_Os11g29390
Os.8307.1.A1_at--868--5711Chr11:16558450..16558474 (25 bp)
GACTGCGACACACATTTTGGTCATT
LOC_Os11g29390
Os.8307.1.A1_at--644--10391Chr11:16558473..16558497 (25 bp)
TTTTGGTGAAGCTTCGGAGTGCCTC
LOC_Os11g29390
Os.8307.1.A1_at--1020--7411NONE
GTGTTGCTGGACGACTCCTACTAAT
NONE
Os.8307.1.A1_at--496--1991NONE
ACTCCTACTAATTGTCTCCATCTGA
NONE
Os.8307.1.A1_at--791--8891Chr11:16558535..16558559 (25 bp)
TGAGATTTTTCTTTCCACATGTTTG
LOC_Os11g29390
Os.8307.1.A1_at--783--6611NONE
GTTGGCACCTTTTCTGATGTTTGTG
NONE
Target Sequence 
TAATTTGGTGGCTAAGCTGGGACCCCCAGTCACTATGTGAGCTTGGAGAAAATTAAGCAGGAAAACCTTATGCGAACATC
GCACTAGCTTACNTTTTTTTTTTTAGTGGTGGTGCTGGATGTTCATTTGGACCTATGTTCTCCATTTATCCGCGATTGTA
CTTTTATCTCGGTCGCCGATCNAAACCCTACGAAAACACCGGTCACTGGCTCCCCCTTTTATTTGGACCCAGTGAATGAT
GTTAGAGCTTGTTTCGAGTNGACACCATGTTGGAAGANGCCAACCGGGCGTTATGTGTANCTCGGCGATGGATGTCATGT
ACCCTGACTGCGACACACATTTTGGTCATTTTGGTGAAGCTTCGGAGTGCCTCTGGTGTTGCTGGACGACTCCTACTAAT
TGTCTCCATCTGAGATTTTTCTTTCCACATGTTTGGAACACCAGATGATGGGTGATGATGCTGACCTGTGGATTTGGAGT
TGTTCAGCATATGTTGGCACCTTTTCTGATGTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8307.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis