Browse Element(s) Details


Os.8316.1.S1_at

Description gb:AK069465.1
DB_XREF= gi:32979489
TID=Os.8316.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 40S ribosomal protein S6 (P0594D10.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022D14, full insert sequence.
FL= gb:AK069465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4295011/1140S ribosomal protein S6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8316.1.S1_at--866--2252Chr07:25722987..25723011 (25 bp)
AAATATGTCAACACCTACCGCAGGA
LOC_Os07g42950
Os.8316.1.S1_at--650--4211Chr07:25723004..25723028 (25 bp)
CCGCAGGACATTCACTACCAAGAAT
LOC_Os07g42950
Os.8316.1.S1_at--478--4791Chr07:25723250..25723274 (25 bp)
GCTCCTAAGATCCAGCGTCTTGTGA
LOC_Os07g42950
Os.8316.1.S1_at--582--4191Chr07:25723284..25723308 (25 bp)
CCCTCCAGAGGAAGCGTGCCAGAAT
LOC_Os07g42950
Os.8316.1.S1_at--546--4831Chr07:25723460..25723484 (25 bp)
GCTACCACCGCCTAAGTTGGTTTAG
LOC_Os07g42950
Os.8316.1.S1_at--963--2431Chr07:25723500..25723524 (25 bp)
AAAATCGTTCATTCCTGAGTTATAA
LOC_Os07g42950
Os.8316.1.S1_at--784--6791Chr07:25723518..25723542 (25 bp)
GTTATAATAGCCCAAGAACCTCTTG
LOC_Os07g42950
Os.8316.1.S1_at--655--2631Chr07:25723534..25723558 (25 bp)
AACCTCTTGCACTATGTTCGATCAA
LOC_Os07g42950
Os.8316.1.S1_at--1--6531Chr07:25723578..25723602 (25 bp)
GATTTCTCGAGTAATTGGTGCAATT
LOC_Os07g42950
Os.8316.1.S1_at--297--10051Chr07:25723638..25723662 (25 bp)
TTGAGTACCGGAGAATTACCATGTT
LOC_Os07g42950
Os.8316.1.S1_at--858--5311Chr07:25723683..25723707 (25 bp)
GAAGGTGGCCTTGTTATTCTGTTGC
LOC_Os07g42950
Target Sequence 
AAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAATGGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCT
TGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGCCAAGAAGAAGTCGGAGG
CTGCTGAGTACCAGAAGCTTCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCAAAGAGGAGG
TCCAAGCTTTCTTCTGCTGCCAAGGCTGCTGCTACCACCGCCTAAGTTGGTTTAGAGCTTGAGATGTTTTAAAATCGTTC
ATTCCTGAGTTATAATAGCCCAAGAACCTCTTGCACTATGTTCGATCAATCCACCCCAGCTACTTTCAGATTTCTCGAGT
AATTGGTGCAATTTTGCATGAACATGCTGCCTTGTTTGGAATTCTTTTTTGAGTACCGGAGAATTACCATGTTAGTNTGT
TGGTTTATGTTTTGAAGGTGGCCTTGTTATTCTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis