Browse Element(s) Details


Os.8598.1.S1_s_at

Description gb:AY346329.1
DB_XREF= gi:33943625
TID=Os.8598.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative homeodomain leucine zipper protein (OSJNBa0095C06.14), mRNA
DEF=Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds.
FL= gb:AY346329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2309011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein
LOC_Os10g23090Os.8598.1.S1_s_at11/1110+11710269..11711707Homeobox domain containing protein, expressed
LOC_Os10g23100Os.6444.1.S1_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23100Os.6444.2.S1_x_at10/1110+11716705..11721554Ras-related protein Rab11D, putative, expressed
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8598.1.S1_s_at--685--4531Chr10:11711168..11711192 (25 bp)
GCCGCCACTGGCGTATAACAGCAAG
LOC_Os10g23090
Os.8598.1.S1_s_at--249--7531Chr10:11711196..11711220 (25 bp)
GTGGACGGCTCGACGGACAGCGACT
LOC_Os10g23090
Os.8598.1.S1_s_at--745--1991Chr10:11711218..11711242 (25 bp)
ACTCGAGCGCGGTGTTCAACGAGGA
LOC_Os10g23090
Os.8598.1.S1_s_at--276--731Chr10:11711373..11711397 (25 bp)
ATGTTCCACGCGTCATCGCATTTCG
LOC_Os10g23090
Os.8598.1.S1_s_at--893--511Chr10:11711387..11711411 (25 bp)
ATCGCATTTCGATGGCCACCAAGAA
LOC_Os10g23090
Os.8598.1.S1_s_at--853--9371Chr10:11711395..11711419 (25 bp)
TCGATGGCCACCAAGAACTCCTCGT
LOC_Os10g23090
Os.8598.1.S1_s_at--728--4851Chr10:11711549..11711573 (25 bp)
GCTAGCGAGAGAGTGAGCTCAGCTA
LOC_Os10g23090
Os.8598.1.S1_s_at--28--3151Chr10:11711579..11711603 (25 bp)
AATTAGCTGGCTTGATTGCTTGCTT
LOC_Os10g23090
Os.8598.1.S1_s_at--267--71Chr10:11711593..11711617 (25 bp)
ATTGCTTGCTTTGTGGCTGGTTGGT
LOC_Os10g23090
Os.8598.1.S1_s_at--466--7371Chr10:11711616..11711640 (25 bp)
GTGACGCCATTGTTGTAAATTACGG
LOC_Os10g23090
Os.8598.1.S1_s_at--760--3091Chr10:11711633..11711657 (25 bp)
AATTACGGCATTGTTAAGTTGTACA
LOC_Os10g23090
Target Sequence 
GCCGCCACTGGCGTATAACAGCAAGGTGGTGGACGGCTCGACGGACAGCGACTCGAGCGCGGTGTTCAACGAGGAGGCGT
CGCCGTACTCCGGCGCGGCCATCGACCACCACCACCACCAAACTCCGGCGAGCTACGACACGGCGGGGTTCACCTCCTTC
TTCGCGCCATCCACCACGCTCACCTCGTCCCTCTCCTTCCCTTCCATGTTCCACGCGTCATCGCATTTCGATGGCCACCA
AGAACTCCTCGTCGGCGGCGGCGGCGCCGGCGCAGTGGCCGACGCCGACCTCGGAGGCGCCGGATTCTTCGCCGGCGACG
AGCACGCCGGCGGCCTCTCCTGGTACGGCGCCGAGGGTTGGTAGAAGCTAGAGCTTAGCTAGCTAGCGAGAGAGTGAGCT
CAGCTAAGCTTAATTAGCTGGCTTGATTGCTTGCTTTGTGGCTGGTTGGTGACGCCATTGTTGTAAATTACGGCATTGTT
AAGTTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8598.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis