Browse Element(s) Details


Os.8669.1.S1_at

Description gb:AK070082.1
DB_XREF= gi:32980106
TID=Os.8669.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.9 (B1066G12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044E02, full insert sequence.
FL= gb:AK070082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1402011/11Optic atrophy 3 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13970OsAffx.20387.1.S1_x_at1/111+7825219..7829019retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g13980Os.21387.3.S1_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980OsAffx.18435.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.36736.1.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13980Os.21387.3.S1_x_at1/111+7829151..7830619transposon protein, putative, unclassified
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein
LOC_Os01g14000NANA1+7841150..7841460hypothetical protein
LOC_Os01g14010Os.55091.1.S1_at8/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14010Os.19512.2.S1_x_at2/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8669.1.S1_at--1141--4731Chr01:7850869..7850893 (25 bp)
GCTGTTGCTGCTTTAATTTTTGAGG
LOC_Os01g14020
Os.8669.1.S1_at--966--6671Chr01:7850872..7850896 (25 bp)
GTTGCTGCTTTAATTTTTGAGGTGC
LOC_Os01g14020
Os.8669.1.S1_at--406--2291Chr01:7850901..7850925 (25 bp)
AAATGCAAGGTCAGAGGCTAGGAAG
LOC_Os01g14020
Os.8669.1.S1_at--976--951Chr01:7850924..7850948 (25 bp)
AGGAGGAAGCTCGTAAACAGGAACT
LOC_Os01g14020
Os.8669.1.S1_at--734--3251Chr01:7852067..7852091 (25 bp)
CAACGGGAAGAGAGTTTATCTAAAG
LOC_Os01g14020
Os.8669.1.S1_at--755--991Chr01:7852098..7852122 (25 bp)
AGGATCTTAAACTGAGGCTTGCTGA
LOC_Os01g14020
Os.8669.1.S1_at--839--8291Chr01:7852113..7852137 (25 bp)
GGCTTGCTGAAATTGAGCACCTCGC
LOC_Os01g14020
Os.8669.1.S1_at--407--2951Chr01:7852123..7852147 (25 bp)
AATTGAGCACCTCGCTAAAGGACGA
LOC_Os01g14020
Os.8669.1.S1_at--488--5071Chr01:7852129..7852153 (25 bp)
GCACCTCGCTAAAGGACGAGGCCTT
LOC_Os01g14020
Os.8669.1.S1_at--253--951Chr01:7852141..7852165 (25 bp)
AGGACGAGGCCTTTCAGGAATCTTG
LOC_Os01g14020
Os.8669.1.S1_at--607--3471Chr01:7852155..7852179 (25 bp)
CAGGAATCTTGAACTTCAAAGGTGT
LOC_Os01g14020
Target Sequence 
GCTGTTGCTGCTTTAATTTTTGAGGTGCAAAGAAATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACT
TGAGGNAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCAC
CTCGCTAAAGGACGAGGCCTTTCAGGAATCTTGAACTTCAAAGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis