Browse Element(s) Details


Os.8717.1.S1_at

Description gb:AK072816.1
DB_XREF= gi:32982839
TID=Os.8717.1
CNT=9
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative arm repeat protein (OSJNBa0027P10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J11, full insert sequence.
FL= gb:AK072816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4136011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8717.1.S1_at--1136--1151Chr10:21898483..21898507 (25 bp)
AGTCTTTGCAAGAATTGTCCTCAGA
LOC_Os10g41360
Os.8717.1.S1_at--205--8171Chr10:21898453..21898477 (25 bp)
GGAACACCATCAGACAGGGACTTCA
LOC_Os10g41360
Os.8717.1.S1_at--933--5911Chr10:21898409..21898433 (25 bp)
GAGCTTATGCTAATCTTCCAACAAG
LOC_Os10g41360
Os.8717.1.S1_at--761--3151Chr10:21898341..21898365 (25 bp)
AATTGCGGCCCAAGGTAATGTTTTG
LOC_Os10g41360
Os.8717.1.S1_at--637--2711Chr10:21898309..21898333 (25 bp)
AAGCTTGTGTCACATTACCACTCGG
LOC_Os10g41360
Os.8717.1.S1_at--1036--771Chr10:21898283..21898307 (25 bp)
ATGTGCAGGCTGTTTGTTTCGGGAT
LOC_Os10g41360
Os.8717.1.S1_at--581--11Chr10:21898143..21898167 (25 bp)
CTTGCCTTTTTTGTTTGCGACGTGG
LOC_Os10g41360
Os.8717.1.S1_at--410--7051Chr10:21898077..21898101 (25 bp)
GTAACTTTGAAATGTCACCGGCGAT
LOC_Os10g41360
Os.8717.1.S1_at--718--1771Chr10:21898061..21898085 (25 bp)
ACCGGCGATGGGAATTCAGGACCTT
LOC_Os10g41360
Os.8717.1.S1_at--661--9631Chr10:21898046..21898070 (25 bp)
TCAGGACCTTCATGCGGTATACAGT
LOC_Os10g41360
Os.8717.1.S1_at--101--9231Chr10:21897973..21897997 (25 bp)
TCCACCTGCGCTGTAACTTTGTAAA
LOC_Os10g41360
Target Sequence 
AGTCTTTGCAAGAATTGTCCTCAGAAATTTGGAACACCATCAGACAGGGACTTCAACATGAAAGCACAGCAGTGGAGCTT
ATGCTAATCTTCCAACAAGGCATTTNTTCAGCAGCCTTNTCAGCCTGTTCNAAACATCGCAAAATTGCGGCCCAAGGTAA
TGTTTTGGCTTTCAAAGCTTGTGTCACATTACCACTCGGCATGTGCAGGCTGTTTGTTTCGGGATGTAGGTAGAATCNCC
TAAAGAGAGCTGTGAGCTGAGTAAACATGAACGAGGCAATCGGGAGGGTTGGGGAGTCGCTTCATGCCTCTCCATGAGGG
GAACCCATAGAGTAGTTTTTCTTGCCTTTTTTGTTTGCGACGTGGGGGGCGTGTGCAATTTTCTTTTATTCATTTGGTGT
GTAAAAGTAACTTTGAAATGTCACCGGCGATGGGAATTCAGGACCTTCATGCGGTATACAGTAAGTTTATTTGTTGATTA
ATGAGGTGTGGTGGTGCCAGACTAGGCTGCTCCACCTGCGCTGTAACTTTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis