Browse Element(s) Details


Os.8717.2.S1_at

Description gb:NM_197764.1
DB_XREF= gi:37536887
TID=Os.8717.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8717 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative arm repeat protein (OSJNBa0027P10.11), mRNA.
PROD=putative arm repeat protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g413609/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41320OsAffx.18597.1.S1_at9/1110+21876957..21878239hypothetical protein
LOC_Os10g41330Os.55386.1.A1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41330Os.46602.1.S1_at11/1110+21883426..21884989AP2 domain containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_x_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.2718.1.S1_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41340Os.46621.1.S1_s_at11/1110+21886719..21892626Palmitoyl protein thioesterase containing protein, expressed
LOC_Os10g41350OsAffx.21778.1.S1_at10/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_x_at8/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41350OsAffx.21778.2.S1_at4/1110+21895003..21897950transposon protein, putative, Pong sub-class
LOC_Os10g41360Os.8717.1.S1_at11/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41360Os.8717.2.S1_at9/1110+21897937..21905568armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os10g41370Os.46620.1.S1_at10/1110+21907243..21912386WD-repeat protein 8, putative, expressed
LOC_Os10g41380Os.2729.1.S1_at11/1110+21914385..21917501expressed protein
LOC_Os10g41390Os.46804.1.S2_x_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.1.S1_at11/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41390Os.46804.2.S1_at10/1110+21918063..21923580Protein kinase domain containing protein, expressed
LOC_Os10g41400Os.56265.1.S1_at11/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41400Os.8003.1.S1_at9/1110+21925094..21927446Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os10g41410Os.2715.1.S1_at11/1110+21928264..21930749Nucleoside diphosphate kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8717.2.S1_at--658--5391NONE
GAAGCTAACAGGACCACACTTGAAC
NONE
Os.8717.2.S1_at--881--10751Chr10:21902365..21902389 (25 bp)
TTGAACACTTCAATCTCGCACTCAA
LOC_Os10g41360
Os.8717.2.S1_at--647--9351Chr10:21902350..21902374 (25 bp)
TCGCACTCAACTTCAAAGCTCTTGA
LOC_Os10g41360
Os.8717.2.S1_at--1154--9631NONE
TCAGATGTTGAAGAACGTTGGCATT
NONE
Os.8717.2.S1_at--534--5451Chr10:21900803..21900827 (25 bp)
GAACGTTGGCATTGACAGTTACTGT
LOC_Os10g41360
Os.8717.2.S1_at--103--6611Chr10:21900777..21900801 (25 bp)
GATTGTTATATCTATCGTTGGGAAT
LOC_Os10g41360
Os.8717.2.S1_at--409--731Chr10:21900750..21900774 (25 bp)
ATGTTTTATCTGTCATTGGGAATGA
LOC_Os10g41360
Os.8717.2.S1_at--1119--5251Chr10:21900731..21900755 (25 bp)
GAATGAATGCTATTCCTTACTCTAG
LOC_Os10g41360
Os.8717.2.S1_at--758--4871Chr10:21900723..21900747 (25 bp)
GCTATTCCTTACTCTAGATATGACG
LOC_Os10g41360
Os.8717.2.S1_at--549--1251Chr10:21900708..21900732 (25 bp)
AGATATGACGACTTTCTGTTTATTC
LOC_Os10g41360
Os.8717.2.S1_at--1125--3671Chr10:21900697..21900721 (25 bp)
CTTTCTGTTTATTCAGGATGTTCAC
LOC_Os10g41360
Target Sequence 
GAAGCTAACAGGACCACACTTGAACACTTCAATCTCGCACTCAACTTCAAAGCTCTTGATGGCTTGATGGATATAGATGG
TGGATGTATGGCAATTGGACAGGAGGGTGGTGTCGCACCTTTGCTCACACTGGCACAATCAGATGTTGAAGAACGTTGGC
ATTGACAGTTACTGTAGATTGTTATATCTATCGTTGGGAATAAATGTTTTATCTGTCATTGGGAATGAATGCTATTCCTT
ACTCTAGATATGACGACTTTCTGTTTATTCAGGATGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8717.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis