Browse Element(s) Details


Os.8727.1.S1_at

Description gb:AK065662.1
DB_XREF= gi:32975680
TID=Os.8727.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nitrate-induced protein (OSJNBb0096M04.100), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041L20, full insert sequence.
FL= gb:AK065662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6314010/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63074Os.16644.1.A1_at11/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_x_at9/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63074Os.14750.1.S1_at1/113+35598767..35605915Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g63090Os.16908.1.S1_at11/113+35608593..35611728Actin-related protein 2/3 complex subunit 4, putative, expressed
LOC_Os03g63110Os.35410.1.S1_at11/113+35612602..35615784B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os03g63124Os.28346.5.S1_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.5.S1_x_at11/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.3.S1_x_at10/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63124Os.28346.4.S1_x_at8/113+35616990..35624977retrotransposon protein, putative, unclassified
LOC_Os03g63140Os.8727.1.S1_at10/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63140OsAffx.25806.1.S1_at2/113+35628426..35631287Nitrate-induced NOI protein, expressed
LOC_Os03g63150Os.35787.2.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63150Os.35787.1.S1_x_at11/113+35632219..35637943powdery mildew resistance protein PM3b, putative, expressed
LOC_Os03g63160OsAffx.25806.1.S1_at11/113+35641868..35642997hypothetical protein
LOC_Os03g63170OsAffx.5116.1.S1_at10/113+35643625..35645941transposon protein, putative, unclassified
LOC_Os03g63190NANA3+35648360..35649242hypothetical protein
LOC_Os03g63200Os.44928.1.S1_at11/113+35650256..35654709powdery mildew resistance protein PM3b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8727.1.S1_at--450--9391Chr03:35630115..35630139 (25 bp)
TCGTCTCCTTCACGTGACCGTAGGG
LOC_Os03g63140
Os.8727.1.S1_at--652--2572Chr03:35642983..35643004 (22 bp)
AACTGGCCGTGGTGATGAGACGCCT
NONE
Os.8727.1.S1_at--665--1331Chr03:35630328..35630352 (25 bp)
AGAGGATCAGCCGTGCCAAAGTTTG
LOC_Os03g63140
Os.8727.1.S1_at--750--5531Chr03:35630423..35630447 (25 bp)
GAAACAGTCTGGTACCGGCAACGCT
LOC_Os03g63140
Os.8727.1.S1_at--1117--4231Chr03:35630449..35630473 (25 bp)
CCGTCATGACCAGCGAGGCAGATTA
LOC_Os03g63140
Os.8727.1.S1_at--167--271NONE
ATATGAATCCACAGGCTGCTCATGC
NONE
Os.8727.1.S1_at--444--4771Chr03:35630992..35631016 (25 bp)
GCTGCTCATGCTTCAGTTGGTTCAA
LOC_Os03g63140
Os.8727.1.S1_at--903--8971Chr03:35631021..35631045 (25 bp)
TGAACTGACAGCCATCCAGCCAAGT
LOC_Os03g63140
Os.8727.1.S1_at--10--591Chr03:35631034..35631058 (25 bp)
ATCCAGCCAAGTCCTGTCAGCGAGG
LOC_Os03g63140
Os.8727.1.S1_at--1027--7091Chr03:35631049..35631073 (25 bp)
GTCAGCGAGGCCTACATAAATTTGT
LOC_Os03g63140
Os.8727.1.S1_at--869--7652Chr03:35659762..35659786 (25 bp)
GGGATTCGTTTATCTTGGAAGGCAT
NONE
Target Sequence 
TCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTT
CAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATC
CTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTC
ATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTT
CAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGA
GATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAG
CTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis