Browse Element(s) Details


Os.8739.1.S1_at

Description gb:AK101811.1
DB_XREF= gi:32987020
TID=Os.8739.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kinase-like protein (OJ1529_G03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066M22, full insert sequence.
FL= gb:AK101811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6044011/11HEAT repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8739.1.S1_at--1042--10211Chr01:35280646..35280670 (25 bp)
TATTGGCACCCAAAGTAAGACCCTC
LOC_Os01g60440
Os.8739.1.S1_at--702--4991Chr01:35280611..35280635 (25 bp)
GCATGATCAACATTTGCACCCCGAA
LOC_Os01g60440
Os.8739.1.S1_at--378--10271Chr01:35280599..35280623 (25 bp)
TTTGCACCCCGAACAAAATCCTTGT
LOC_Os01g60440
Os.8739.1.S1_at--534--3031Chr01:35280583..35280607 (25 bp)
AATCCTTGTGGATGTCTTTCATTTT
LOC_Os01g60440
Os.8739.1.S1_at--218--3591Chr01:35280564..35280588 (25 bp)
CATTTTTACTGATTGTGCTGTGTTA
LOC_Os01g60440
Os.8739.1.S1_at--703--3731Chr01:35280515..35280539 (25 bp)
CTAAATTTATCTATCGCTCTCTCTG
LOC_Os01g60440
Os.8739.1.S1_at--114--6631Chr01:35280490..35280514 (25 bp)
GTTGTGTGCACAGCGGGCTTTTAAA
LOC_Os01g60440
Os.8739.1.S1_at--958--3031Chr01:35280457..35280481 (25 bp)
AATCCTGGGATTGCAAATTTCTGTG
LOC_Os01g60440
Os.8739.1.S1_at--638--8191Chr01:35280418..35280442 (25 bp)
GGAAGATTATTGCTTCTTTATGACT
LOC_Os01g60440
Os.8739.1.S1_at--224--5711Chr01:35280397..35280421 (25 bp)
GACTAATTCACCAATCTGTTACTGT
LOC_Os01g60440
Os.8739.1.S1_at--839--6771Chr01:35280380..35280404 (25 bp)
GTTACTGTAGTTATCTCAGCGTACG
LOC_Os01g60440
Target Sequence 
TATTGGCACCCAAAGTAAGACCCTCCCAACCCTCTGCATGATCAACATTTGCACCCCGAACAAAATCCTTGTGGATGTCT
TTCATTTTTACTGATTGTGCTGTGTTAACAGTTTTCTTTTTAAAAAGTGTTCTAAATTTATCTATCGCTCTCTCTGGTTG
TGTGCACAGCGGGCTTTTAAAGAAAAAAAAATCCTGGGATTGCAAATTTCTGTGGTATTATTTTTTCAGGAAGATTATTG
CTTCTTTATGACTAATTCACCAATCTGTTACTGTAGTTATCTCAGCGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis