Browse Element(s) Details


Os.8739.3.S1_x_at

Description gb:NM_191110.1
DB_XREF= gi:34909303
GEN=OJ1529_G03.14
TID=Os.8739.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8739 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) kinase-like protein (OJ1529_G03.14), mRNA.
PROD=kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6044011/11HEAT repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60389Os.45173.1.S1_x_at3/111+35257254..35260485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60400NANA1+35260751..35261460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60410Os.11479.1.S1_at11/111+35264606..35268683Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os01g60420Os.30059.1.S1_at10/111+35270657..35272985expressed protein
LOC_Os01g60420Os.30059.2.S1_x_at5/111+35270657..35272985expressed protein
LOC_Os01g60420Os.56068.1.S1_x_at1/111+35270657..35272985expressed protein
LOC_Os01g60430Os.35934.1.S1_at11/111+35273474..35275876pentatricopeptide, putative, expressed
LOC_Os01g60440Os.8739.1.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.2.S1_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.8739.3.S1_x_at11/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60440Os.26818.2.S1_at1/111+35275955..35286189HEAT repeat-containing protein, putative, expressed
LOC_Os01g60450OsAffx.2373.1.S1_x_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60450OsAffx.2373.1.S1_at11/111+35288825..35290491Trans-cinnamate 4-monooxygenase, putative
LOC_Os01g60460OsAffx.21784.1.S1_at11/111+35290992..35291414hypothetical protein
LOC_Os01g60470OsAffx.23870.1.S1_at9/111+35295785..35297557hypothetical protein
LOC_Os01g60480NANA1+35297931..35302411retrotransposon protein, putative, unclassified
LOC_Os01g60490OsAffx.23871.1.S1_at11/111+35308317..35312296WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8739.3.S1_x_at--1004--9991Chr01:35276878..35276902 (25 bp)
TAGCATATGCACCATCCACTTCTAG
LOC_Os01g60440
Os.8739.3.S1_x_at--900--9991Chr01:35276856..35276880 (25 bp)
TAGCTCTCTTGATCAAACTGCACCA
LOC_Os01g60440
Os.8739.3.S1_x_at--1151--1711Chr01:35276835..35276859 (25 bp)
ACCAGCATCAGCAAGGTCCTCGGTG
LOC_Os01g60440
Os.8739.3.S1_x_at--401--1291Chr01:35276736..35276760 (25 bp)
AGATCCGTTTGACGAGAAGCCTCCA
LOC_Os01g60440
Os.8739.3.S1_x_at--1031--451Chr01:35276709..35276733 (25 bp)
ATCTCTTCTCTCTAACATACAGGCT
LOC_Os01g60440
Os.8739.3.S1_x_at--151--3511Chr01:35276694..35276718 (25 bp)
CATACAGGCTGCTCAGAAACGTCCT
LOC_Os01g60440
Os.8739.3.S1_x_at--882--5531Chr01:35276679..35276703 (25 bp)
GAAACGTCCTGTGGCGCAACCAAAA
LOC_Os01g60440
Os.8739.3.S1_x_at--519--2371Chr01:35276428..35276452 (25 bp)
AAACCTTCAACGTCGCACAATGATG
LOC_Os01g60440
Os.8739.3.S1_x_at--435--391Chr01:35276363..35276387 (25 bp)
ATCAGCTGGGAAGCCCTTGAAGCCA
LOC_Os01g60440
Os.8739.3.S1_x_at--273--4871Chr01:35276275..35276299 (25 bp)
GCTAGACCTCTAGCTTCATCAGGTA
LOC_Os01g60440
Os.8739.3.S1_x_at--696--6191Chr01:35276244..35276268 (25 bp)
GAGGAACAAAGCCAGCTCAGCCAAA
LOC_Os01g60440
Target Sequence 
TAGCATATGCACCATCCACTTCTAGCTCTCTTGATCAAACTGCACCAGCATCAGCAAGGTCCTCGGTGGATGGGTGGGGT
GAAATTGAAAACGATAATACTCAGGAAGAGAATGGTAGTGATAAAGAAGGATGGGATGATGTAGATCCGTTTGACGAGAA
GCCTCCACCATCTCTTCTCTCTAACATACAGGCTGCTCAGAAACGTCCTGTGGCGCAACCAAAACAACCAGTATCAAATT
CGTCAAGATTAAATCAACCAAAGGTGCCCAAACCAGAAGAGGATCCTCTATGGGGTTCTATAGCTGCTCCAGCACCCAAA
AATGCATCGAAGTCTTCAGACATCAAACCTTCAACGTCGCACAATGATGACGATGACCTCTGGGGTTCGATAGCTGCACC
TCCACCGAAATCAGCTGGGAAGCCCTTGAAGCCACCAGCAGCAGCAAACAGTGACGATTTATGGGGTGCCATCGCTGCAC
CCCCACCATCAACCAAAGCTAGACCTCTAGCTTCATCAGGTAGGGGTCGAGGAACAAAGCCAGCTCAGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8739.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis