Browse Element(s) Details


Os.8768.1.S1_a_at

Description gb:AK121801.1
DB_XREF= gi:37991424
TID=Os.8768.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.8768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097G14, full insert sequence.
FL= gb:AK063844.1 gb:AK121801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4863011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8768.1.S1_a_at--303--9291Chr02:29779694..29779718 (25 bp)
TCCGATGCTCATAGTTATCCACCAA
LOC_Os02g48630
Os.8768.1.S1_a_at--1040--9071Chr02:29779699..29779723 (25 bp)
TGCTCATAGTTATCCACCAATCTGT
LOC_Os02g48630
Os.8768.1.S1_a_at--1124--6771Chr02:29779707..29779731 (25 bp)
GTTATCCACCAATCTGTGCTGGCGA
LOC_Os02g48630
Os.8768.1.S1_a_at--222--491Chr02:29779718..29779742 (25 bp)
ATCTGTGCTGGCGACTACGTCGAAC
LOC_Os02g48630
Os.8768.1.S1_a_at--546--5691Chr02:29779730..29779754 (25 bp)
GACTACGTCGAACAGGAACTATCAG
LOC_Os02g48630
Os.8768.1.S1_a_at--910--5471Chr02:29779739..29779763 (25 bp)
GAACAGGAACTATCAGTAATCAATC
LOC_Os02g48630
Os.8768.1.S1_a_at--380--1471Chr02:29779773..29779797 (25 bp)
AGAATGGATTCTAGACGTTATGCAG
LOC_Os02g48630
Os.8768.1.S1_a_at--846--1371Chr02:29779785..29779809 (25 bp)
AGACGTTATGCAGATTTCTCGTTAA
LOC_Os02g48630
Os.8768.1.S1_a_at--971--5031Chr02:29779794..29779818 (25 bp)
GCAGATTTCTCGTTAACCTTACAAT
LOC_Os02g48630
Os.8768.1.S1_a_at--401--9511Chr02:29779801..29779825 (25 bp)
TCTCGTTAACCTTACAATTCATATG
LOC_Os02g48630
Os.8768.1.S1_a_at--1044--1731Chr02:29779809..29779833 (25 bp)
ACCTTACAATTCATATGATCAGCAA
LOC_Os02g48630
Target Sequence 
TCCGATGCTCATAGTTATCCACCAATCTGTGCTGGCGACTACGTCGAACAGGAACTATCAGTAATCAATCTGAAAGGAAA
GAATGGATTCTAGACGTTATGCAGATTTCTCGTTAACCTTACAATTCATATGATCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8768.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis