Browse Element(s) Details


Os.8821.1.S1_at

Description gb:AK063674.1
DB_XREF= gi:32973692
TID=Os.8821.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative allyl alcohol dehydrogenase (B1078G07.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D10, full insert sequence.
FL= gb:AK063674.1 gb:AK099151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6672011/11NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g667402/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006979biological_processresponse to oxidative stress
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8821.1.S1_at--844--1411Chr01:39080868..39080967 (25 bp)
AGAAAGTTGAGCTCTTGAAGGGCAA
LOC_Os01g66720
Os.8821.1.S1_at--71--7951Chr01:39080972..39080996 (25 bp)
GGATTTGATGCAGCTTTCAACTATA
LOC_Os01g66720
Os.8821.1.S1_at--473--1331Chr01:39080998..39081022 (25 bp)
AGAGGAGCCTGACTTGACTGCAGCC
LOC_Os01g66720
Os.8821.1.S1_at--345--4371Chr01:39081020..39081321 (25 bp)
GCCTTGAAAAGGTATTTCCCTGAAG
LOC_Os01g66720
Os.8821.1.S1_at--332--8751Chr01:39081443..39081467 (25 bp)
TGTAGGGATCCACAACATCTTCTGC
LOC_Os01g66720
Os.8821.1.S1_at--1075--2491Chr01:39081456..39081480 (25 bp)
AACATCTTCTGCCTTGTACCAAAGA
LOC_Os01g66720
Os.8821.1.S1_at--1033--572Chr01:39087688..39087712 (25 bp)
ATCCAGAGCGACCACCTCCATATGT
LOC_Os01g66740
Os.8821.1.S1_at--689--9232Chr01:39087704..39087728 (25 bp)
TCCATATGTTCCCACAGTTTGTCAG
LOC_Os01g66740
Os.8821.1.S1_at--380--3011Chr01:39081609..39081633 (25 bp)
AATGCACCTGCTGCGTTGGTTGGTC
LOC_Os01g66720
Os.8821.1.S1_at--441--4031Chr01:39081622..39081646 (25 bp)
CGTTGGTTGGTCTATTCAGTGGAAA
LOC_Os01g66720
Os.8821.1.S1_at--630--8671Chr01:39081669..39081693 (25 bp)
TGTGTGTCACAGGAGTTAAGTCAGT
LOC_Os01g66720
Target Sequence 
AGAAAGTTGAGCTCTTGAAGGGCAAGTTTGGATTTGATGCAGCTTTCAACTATAAAGAGGAGCCTGACTTGACTGCAGCC
TTGAAAAGGTATTTCCCTGAAGGTATTGACATCTACTTTGAGAACGTAGGTGGTCCAATGCTTGATGCTGTACTCCTCAA
CATGAGGACCCATGGTCGCATTGCCGTATGCGGGATGGTCTCTCAGAATGCGCTGACTGATCCTGTAGGGATCCACAACA
TCTTCTGCCTTGTACCAAAGAGGATAAGAATGCAGGGGTTCATCCAGAGCGACCACCTCCATATGTTCCCACAGTTTGTC
AGTGACATGGCAAAGCATTACAGAGATGGCAAGATTGTGTATGTAGAAGACATGAGCATAGGGTTGGAGAATGCACCTGC
TGCGTTGGTTGGTCTATTCAGTGGAAAAAATGTTGGCAAGAAGGTTGTGTGTGTGTCACAGGAGTTAAGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis