Browse Element(s) Details


Os.9101.1.S1_at

Description gb:AF402797.1
DB_XREF= gi:15430716
TID=Os.9101.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9101 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone C12085_1A putative glutathione S-transferase OsGSTU10 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU10
FL= gb:AK061233.1 gb:AF402797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3878011/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38710Os.9775.1.S1_at11/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38710Os.46635.1.S1_x_at1/1110+20292769..20293826glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38720Os.46825.1.S1_at11/1110+20299403..20300301Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38730OsAffx.20172.1.S1_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38730OsAffx.20172.1.S1_x_at11/1110+20301464..20302195glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.4762.1.S1_at11/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.46634.1.S1_x_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38740Os.149.1.S1_at1/1110+20304207..20305257glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38750OsAffx.20171.1.S1_at11/1110+20309753..20312847transposon protein, putative, Mutator sub-class
LOC_Os10g38760OsAffx.30713.1.S1_x_at9/1110+20313372..20313827hypothetical protein
LOC_Os10g38760OsAffx.30713.1.S1_at6/1110+20313372..20313827hypothetical protein
LOC_Os10g38770OsAffx.18570.1.S1_at11/1110+20314720..20315200GRF zinc finger family protein
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9101.1.S1_at--614--8851Chr10:20316846..20316870 (25 bp)
TGATCGGGCGCAGGATGATCGACCC
LOC_Os10g38780
Os.9101.1.S1_at--978--3971Chr10:20316894..20316918 (25 bp)
CGTGGGAGGATCTCTTCCGCGCCAC
LOC_Os10g38780
Os.9101.1.S1_at--498--6071Chr10:20316965..20316989 (25 bp)
GAGTTCAGGCAGACGGCACTCGCCT
LOC_Os10g38780
Os.9101.1.S1_at--983--3071Chr10:20317006..20317030 (25 bp)
AATCACTCTGTGACACTAAAGACAT
LOC_Os10g38780
Os.9101.1.S1_at--1024--9831Chr10:20317022..20317046 (25 bp)
TAAAGACATGTATGTGGCACGCCAT
LOC_Os10g38780
Os.9101.1.S1_at--833--1811Chr10:20317040..20317064 (25 bp)
ACGCCATGCGTATCCAAGCTAAGTT
LOC_Os10g38780
Os.9101.1.S1_at--1134--3731Chr10:20317058..20317082 (25 bp)
CTAAGTTTGTGAGGCTGCGACAGGC
LOC_Os10g38780
Os.9101.1.S1_at--1159--5651Chr10:20317076..20317100 (25 bp)
GACAGGCAGCCATATACATCTAGTT
LOC_Os10g38780
Os.9101.1.S1_at--243--871Chr10:20317112..20317136 (25 bp)
ATGGCCCATGGCGTGCTTAATTAAA
LOC_Os10g38780
Os.9101.1.S1_at--1117--2231Chr10:20317134..20317158 (25 bp)
AAATTGTTTTCTTCTCGATGCTACT
LOC_Os10g38780
Os.9101.1.S1_at--618--10551Chr10:20317142..20317166 (25 bp)
TTCTTCTCGATGCTACTTTTGACTT
LOC_Os10g38780
Target Sequence 
TGATCGGGCGCAGGATGATCGACCCGGCGAGGACGCCGGCGCTGGCCGCGTGGGAGGATCTCTTCCGCGCCACCGATGCG
GCCAGGGGCGTCTTGCCGGATGACGCCGACAAGATGCTCGAGTTCAGGCAGACGGCACTCGCCTTGGGCGCCTCCAAAAA
AATCACTCTGTGACACTAAAGACATGTATGTGGCACGCCATGCGTATCCAAGCTAAGTTTGTGAGGCTGCGACAGGCAGC
CATATACATCTAGTTTTGTTTCTTCCATGGCCCATGGCGTGCTTAATTAAATTGTTTTCTTCTCGATGCTACTTTTGACT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis