Browse Element(s) Details


Os.9108.1.S1_a_at

Description gb:AF383878.1
DB_XREF= gi:14495347
TID=Os.9108.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9108 (NCBI UniGene Cluster)
DEF=Oryza sativa soluble starch synthase II-1 mRNA, complete cds.
PROD=soluble starch synthase II-1
FL= gb:AF383878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3015611/11Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30120NANA10+15319073..15319463laccase, putative
LOC_Os10g30130OsAffx.8091.1.S1_at11/1110+15320842..15327031retrotransposon protein, putative, unclassified
LOC_Os10g30140OsAffx.30603.2.S1_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.2.S1_x_at11/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30140OsAffx.30603.4.S1_x_at2/1110+15330085..15331936Multicopper oxidase family protein
LOC_Os10g30150Os.5338.1.S1_at11/1110+15334244..15335177universal stress protein family protein, expressed
LOC_Os10g30156Os.9108.1.S1_a_at11/1110+15343797..15351682Soluble starch synthase 2-1, chloroplast precursor, putative, expressed
LOC_Os10g30162Os.46581.1.S1_at11/1110+15352142..15354201Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30170OsAffx.30604.1.S1_x_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30170OsAffx.30604.1.S1_at11/1110+15354600..15355313hypothetical protein
LOC_Os10g30180OsAffx.30605.1.S1_at10/1110+15359380..15360457Hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190OsAffx.18461.1.S1_at11/1110+15360834..15363711potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os10g30200OsAffx.8088.1.S1_at11/1110+15366285..15367061Skp1 family, dimerisation domain containing protein
LOC_Os10g30210OsAffx.30606.1.S1_at11/1110+15368898..15370644expressed protein
LOC_Os10g30220OsAffx.18462.1.S1_at11/1110+15371114..15371945hypothetical protein
LOC_Os10g30230OsAffx.6818.1.S1_at11/1110+15373624..15374238hypothetical protein
LOC_Os10g30240OsAffx.17314.1.S1_s_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class
LOC_Os10g30240OsAffx.17314.1.S1_at11/1110+15374419..15377689transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9108.1.S1_a_at--554--7751Chr10:15351110..15351134 (25 bp)
GGTGATCAGTCCAAGAAGACCTCGA
LOC_Os10g30156
Os.9108.1.S1_a_at--639--2771Chr10:15351125..15351149 (25 bp)
AAGACCTCGACGGTTGTTCAGTCAT
LOC_Os10g30156
Os.9108.1.S1_a_at--862--1151Chr10:15351144..15351168 (25 bp)
AGTCATTCATGACCGAAATGCCTTT
LOC_Os10g30156
Os.9108.1.S1_a_at--142--2291Chr10:15351159..15351183 (25 bp)
AAATGCCTTTTTCTCGTGTCAGCTG
LOC_Os10g30156
Os.9108.1.S1_a_at--17--9671Chr10:15351177..15351201 (25 bp)
TCAGCTGCTCAGATGCGGCCACCAT
LOC_Os10g30156
Os.9108.1.S1_a_at--798--8431Chr10:15351193..15351217 (25 bp)
GGCCACCATCTAGTTCCATGGCTTA
LOC_Os10g30156
Os.9108.1.S1_a_at--1129--851Chr10:15351210..15351234 (25 bp)
ATGGCTTACATCTTCCTGTGATTTG
LOC_Os10g30156
Os.9108.1.S1_a_at--434--4811Chr10:15351469..15351493 (25 bp)
GCTCGGTTAGATGCTTTTAGTACAG
LOC_Os10g30156
Os.9108.1.S1_a_at--848--1371Chr10:15351517..15351541 (25 bp)
AGACTAGTTGATATTTCCCCTATGC
LOC_Os10g30156
Os.9108.1.S1_a_at--840--5671Chr10:15351598..15351622 (25 bp)
GATCTTTAGACGATTAGCGTCCCGG
LOC_Os10g30156
Os.9108.1.S1_a_at--260--9991Chr10:15351612..15351636 (25 bp)
TAGCGTCCCGGGATTTCCCAGATGA
LOC_Os10g30156
Target Sequence 
GGTGATCAGTCCAAGAAGACCTCGACGGTTGTTCAGTCATTCATGACCGAAATGCCTTTTTCTCGTGTCAGCTGCTCAGA
TGCGGCCACCATCTAGTTCCATGGCTTACATCTTCCTGTGATTTGGATGAACAGAGTTTTTTTGTCAGATCTGACATCAT
TTTCAAGAAGGCACATGATGAACCTACTTCCCAGGTGAATACAGCAGCGGACGATGCCTTTGTTGGAAGGTGGCAAAACA
CATGGAAGATTCAGCCGTCTGCCAGCATGCACCTCTGTCCTAAGGAGAGGCTCCAAGCCCCATTGTGCGCTCTGGAGAGG
CTCCAAACCACCATTGTTCGCCCCTGGGTAGGTTGTTGAGCTCGGTTAGATGCTTTTAGTACAGTAGAATAGCAGATACT
AGCGGATAGACTAGTTGATATTTCCCCTATGCACCGAGTGGTTCGGTTGTACCTTATTTTTTTCTTGGCTCTTGTTGTCC
AGTTCTTCGATCTTTAGACGATTAGCGTCCCGGGATTTCCCAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9108.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis