Browse Element(s) Details


Os.9499.1.S1_at

Description gb:AK071200.1
DB_XREF= gi:32981223
TID=Os.9499.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.9499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative YLP (P0684E06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086K07, full insert sequence.
FL= gb:AK071200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4698011/11Vacuolar ATP synthase subunit E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007030biological_processGolgi organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005753cellular_componentproton-transporting ATP synthase complex (sensu Eukaryota)
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9499.1.S1_at--56--5471Chr01:27141608..27141985 (25 bp)
GAACTCGTCGTTCAGGGTTTGCTTC
LOC_Os01g46980
Os.9499.1.S1_at--8--2351Chr01:27141991..27142015 (25 bp)
AAAGAGCCAGCGGTACTTCTCCGTT
LOC_Os01g46980
Os.9499.1.S1_at--560--4231Chr01:27142011..27142035 (25 bp)
CCGTTGCCGCAAAGAAGACCATCAT
LOC_Os01g46980
Os.9499.1.S1_at--6--8791Chr01:27142110..27142134 (25 bp)
TGTTGACCACGATGTGTACCTACCG
LOC_Os01g46980
Os.9499.1.S1_at--49--8831Chr01:27142787..27142811 (25 bp)
TGTTGTGCTGGCTTCTCGAGATGGA
LOC_Os01g46980
Os.9499.1.S1_at--643--1431Chr01:27142825..27142849 (25 bp)
AGAACACACTTGATGCCAGGCTGGA
LOC_Os01g46980
Os.9499.1.S1_at--289--2711Chr01:27143097..27143121 (25 bp)
AAGCTTCTTTTTGGTCAGGTGACGG
LOC_Os01g46980
Os.9499.1.S1_at--735--3831Chr01:27143146..27143170 (25 bp)
CTGCGGTATAGCTGCTTCCATGTAA
LOC_Os01g46980
Os.9499.1.S1_at--679--8211Chr01:27143201..27143225 (25 bp)
GGAATTTCACCTGTTTGTGCCAAAT
LOC_Os01g46980
Os.9499.1.S1_at--889--10791Chr01:27143269..27143293 (25 bp)
TTGTTCATTATTATCGCCGAGCACC
LOC_Os01g46980
Os.9499.1.S1_at--752--10211Chr01:27143297..27143321 (25 bp)
TATTCGCACGCTTGTTTGCTCAGAG
LOC_Os01g46980
Target Sequence 
GAACTCGTCGTTCAGGGTTTGCTTCGGTTGAAAGAGCCAGCGGTACTTCTCCGTTGCCGCAAAGAAGACCATCATCATGT
GGAATCTGTACTGCATTCAGCAAAGAATGAATATGCGTCAAAAGCAGAAGTTCATCACCCAGAGATACTTGTTGACCACG
ATGTGTACCTACCGCCTTCTCCAAGCTCTCATGATTCCCATGAGAGGTTTTGCTCTGGAGGTGTTGTGCTGGCTTCTCGA
GATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGATCCGGAA
GCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTGCGGTATAGCTGCTTCCATGTAATTAGCTGC
AGGTTCGAACCTGCAGCTGCAAGGAATTTCACCTGTTTGTGCCAAATTGATTGTTTAAAGTATTCATCCGCTATGTAAAA
CACTACCTATTTGTTCATTATTATCGCCGAGCACCAACTATTCGCACGCTTGTTTGCTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis