Browse Element(s) Details


Os.9587.1.S1_a_at

Description gb:AK061863.1
DB_XREF= gi:32971881
TID=Os.9587.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H03, full insert sequence.
FL= gb:AK061863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3350010/11Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33470Os.17268.1.S1_at10/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.26471.1.S1_at2/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33470OsAffx.12779.1.S1_at1/119+19727942..19735046Peroxisomal membrane carrier protein, putative, expressed
LOC_Os09g33480Os.20016.1.S1_at8/119+19736709..19739784expressed protein
LOC_Os09g33490Os.23030.1.S1_at10/119+19748604..19750457No apical meristem protein, expressed
LOC_Os09g33500Os.9587.1.S1_a_at10/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.57482.1.S1_x_at5/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33500Os.20293.1.S1_at1/119+19752230..19758520Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed
LOC_Os09g33510Os.17791.1.S1_at11/119+19759987..19765919hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g33520Os.51214.1.S1_x_at11/119+19769214..19774557expressed protein
LOC_Os09g33520Os.51214.2.S1_at11/119+19769214..19774557expressed protein
LOC_Os09g33520OsAffx.30126.1.S1_at10/119+19769214..19774557expressed protein
LOC_Os09g33530Os.16922.1.S1_at8/119+19774811..19780195esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os09g33540NANA9+19781745..19782032hypothetical protein
LOC_Os09g33550Os.49294.1.S1_at11/119+19783043..19786296CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0010240cellular_componentpyruvate dehydrogenase complex (sensu Viridiplantae)
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
GO:0004802molecular_functiontransketolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9587.1.S1_a_at--1037--2251Chr09:19756516..19756540 (25 bp)
TAAACCTTCGTTCAATTAGACCACT
LOC_Os09g33500
Os.9587.1.S1_a_at--213--8891Chr09:19756595..19756619 (25 bp)
TGAGGAAAGCTTCCCACAGCATGGG
LOC_Os09g33500
Os.9587.1.S1_a_at--474--8331NONE
GGCTGTCCCACAGGTTGACGATATT
NONE
Os.9587.1.S1_a_at--39--6531Chr09:19758116..19758140 (25 bp)
GATATTGTCCGTGCAGCGAAGCGTG
LOC_Os09g33500
Os.9587.1.S1_a_at--179--7311Chr09:19758138..19758162 (25 bp)
GTGCGTGCTACAGAGCGGTGCCCAT
LOC_Os09g33500
Os.9587.1.S1_a_at--1077--5991Chr09:19758184..19758208 (25 bp)
GAGACCTCTTTTACATCATCTTTCT
LOC_Os09g33500
Os.9587.1.S1_a_at--241--4251Chr09:19758213..19758237 (25 bp)
CCGTCCGGCCAACATATGATTCATA
LOC_Os09g33500
Os.9587.1.S1_a_at--148--8611Chr09:19758239..19758263 (25 bp)
TGGTGTCCAACAATTGCCCAAACTC
LOC_Os09g33500
Os.9587.1.S1_a_at--958--4171Chr09:19758299..19758323 (25 bp)
CCCACCTATTCTTTTAGCTGCAGTT
LOC_Os09g33500
Os.9587.1.S1_a_at--983--1231Chr09:19758320..19758344 (25 bp)
AGTTGCATCACTGCGTTCGTTGGTG
LOC_Os09g33500
Os.9587.1.S1_a_at--90--8631Chr09:19758340..19758364 (25 bp)
TGGTGGTGACCCAAATTTCCCTCTT
LOC_Os09g33500
Target Sequence 
TAAACCTTCGTTCAATTAGACCACTTGATAGAGCTACTATCAATGCATCTGTTAGAAAAACAAATAGATTGGTGACCATT
GAGGAAAGCTTCCCACAGCATGGGATTGGTGCTGAGATATGCATGTCTGTTGTTGAGGAAAGCTTTGAATATCTTGATGC
ACCAGTTGAGAGAATTGCTGGAGCTGATGTACCCATGCCCTATGCTGCCAATCTNGAGAGGATGGCTGTCCCACAGGTTG
ACGATATTGTCCGTGCAGCGAAGCGTGCGTGCTACAGAGCGGTGCCCATGGCAGCAACTGCCTGATAGGAGAGACCTCTT
TTACATCATCTTTCTTTTCCCGTCCGGCCAACATATGATTCATAATGGTGTCCAACAATTGCCCAAACTCAAAGCGAGCT
AATTTTGCAAGATATTTCCATGACCCCCACCTATTCTTTTAGCTGCAGTTGCATCACTGCGTTCGTTGGTGGTGACCCAA
ATTTCCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9587.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis