Browse Element(s) Details


Os.9592.1.S1_at

Description gb:AK121884.1
DB_XREF= gi:37991507
TID=Os.9592.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104P13, full insert sequence.
FL= gb:AK101860.1 gb:AK121884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4131011/11COBRA-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41260Os.15461.1.S1_at11/117+24722867..24726483pentatricopeptide, putative, expressed
LOC_Os07g41270NANA7+24732431..24733084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41280Os.6393.1.S1_at11/117+24735233..247404976-phosphogluconolactonase family protein, expressed
LOC_Os07g41290OsAffx.16671.1.S1_at11/117+24742760..24743414expressed protein
LOC_Os07g41300Os.26596.1.S1_s_at11/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41300OsAffx.32241.1.S1_x_at7/117+24745452..24746620Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
LOC_Os07g41310Os.9592.1.S1_at11/117+24750092..24753702COBRA-like protein 2 precursor, putative, expressed
LOC_Os07g41320OsAffx.28857.1.S1_at10/117+24753756..24756457Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os07g41330Os.11994.1.S1_s_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.5591.1.S1_at11/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.11994.1.S1_at10/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330Os.33305.1.S1_at4/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.3.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41330OsAffx.27250.1.S1_x_at1/117+24757792..24761853Mitochondrial import inner membrane translocase subunit Tim17 B, putative, expressed
LOC_Os07g41340Os.51451.1.S1_at11/117+24763984..24765018B12D protein, expressed
LOC_Os07g41340OsAffx.5592.1.S1_at1/117+24763984..24765018B12D protein, expressed
LOC_Os07g41350OsAffx.16673.1.S1_s_at11/117+24766403..24767370B12D protein, expressed
LOC_Os07g41360Os.5451.1.S1_at11/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os07g41360Os.55265.1.S1_at1/117+24771581..24774831Alpha-1,4-glucan-protein synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0010215biological_processcellulose microfibril organization
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009897cellular_componentexternal side of plasma membrane
GO:0009930cellular_componentlongitudinal side of cell surface (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9592.1.S1_at--109--3011Chr07:24753145..24753169 (25 bp)
AATGACTTGCTCATGACGGCGGGTC
LOC_Os07g41310
Os.9592.1.S1_at--810--2991Chr07:24753178..24753202 (25 bp)
AATGTTCAGTCTGAGCTTCTGTTCA
LOC_Os07g41310
Os.9592.1.S1_at--869--5811Chr07:24753208..24753232 (25 bp)
GACCCCAAGAGTTTCACCTTTGAGA
LOC_Os07g41310
Os.9592.1.S1_at--1070--5571Chr07:24753231..24753255 (25 bp)
GAAAGGCTGGGCCTTCCCAAGACGT
LOC_Os07g41310
Os.9592.1.S1_at--1161--5611Chr07:24753271..24753295 (25 bp)
GACAACTGTGTGATGCCACCACCAG
LOC_Os07g41310
Os.9592.1.S1_at--494--1711Chr07:24753291..24753315 (25 bp)
ACCAGATGCATATCCATGGCTGCCA
LOC_Os07g41310
Os.9592.1.S1_at--279--8491Chr07:24753307..24753331 (25 bp)
TGGCTGCCAAATGCTTCAACAAGAG
LOC_Os07g41310
Os.9592.1.S1_at--647--3151Chr07:24753342..24753366 (25 bp)
AATTCTCCTTCCATTCATTACCATT
LOC_Os07g41310
Os.9592.1.S1_at--681--8511Chr07:24753367..24753391 (25 bp)
TGGACAGCACTGACATTCTTGATGG
LOC_Os07g41310
Os.9592.1.S1_at--305--2331Chr07:24753434..24753458 (25 bp)
AAAGTTTTGACCTTGTTGTGCATTA
LOC_Os07g41310
Os.9592.1.S1_at--1082--2351Chr07:24753516..24753540 (25 bp)
AAACCGTCGTTGATCATTGTATAAA
LOC_Os07g41310
Target Sequence 
AATGACTTGCTCATGACGGCGGGTCCAGATGGAAATGTTCAGTCTGAGCTTCTGTTCAAGAAGGACCCCAAGAGTTTCAC
CTTTGAGAAAGGCTGGGCCTTCCCAAGACGTNTATACTTCAATGGTGACAACTGTGTGATGCCACCACCAGATGCATATC
CATGGCTGCCAAATGCTTCAACAAGAGTGATGTCTTCAATTCTCCTTCCATTCATTACCATTTGGACAGCACTGACATTC
TTGATGGTTTACGCATAGTGAAAGGAAATCGTAATTTTACGTATTCAGGAAAGTTTTGACCTTGTTGTGCATTACAAAGT
TTTAGATGATATGTTGCATGAAGAGAAGATTCAGTGCAGATACCTAACCANAAACCGTCGTTGATCATTGTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis