Browse Element(s) Details


Os.9622.1.S1_at

Description gb:AK101270.1
DB_XREF= gi:32986479
TID=Os.9622.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29961 WD repeat protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032N04, full insert sequence.
FL= gb:AK101270.1 gb:AK111951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0572011/11phage head-tail adaptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9622.1.S1_at--1099--2911Chr03:2829545..2829569 (25 bp)
AAGGAGTGGTCTATGGTTCCTTTGA
LOC_Os03g05720
Os.9622.1.S1_at--356--8911Chr03:2830077..2830101 (25 bp)
TGAGCTTGTTTGTAGGGTTTGCCTA
LOC_Os03g05720
Os.9622.1.S1_at--675--6931Chr03:2830088..2830112 (25 bp)
GTAGGGTTTGCCTAGTGCTGCTTCA
LOC_Os03g05720
Os.9622.1.S1_at--643--10071Chr03:2830100..2830124 (25 bp)
TAGTGCTGCTTCAAACACACCACAG
LOC_Os03g05720
Os.9622.1.S1_at--1083--1691Chr03:2830123..2830147 (25 bp)
AGCCAATTAACTACGACACCATCTG
LOC_Os03g05720
Os.9622.1.S1_at--333--5171Chr03:2830147..2830171 (25 bp)
GCAAGATCGATACTTACAGAACTGA
LOC_Os03g05720
Os.9622.1.S1_at--1054--2631Chr03:2830305..2830329 (25 bp)
AACCTTGCTGCAATGGATCATATAA
LOC_Os03g05720
Os.9622.1.S1_at--341--10651Chr03:2830455..2830479 (25 bp)
TTCCGAGATGCAAGAGCGAAGCTGA
LOC_Os03g05720
Os.9622.1.S1_at--684--5011Chr03:2830490..2830514 (25 bp)
GCAGGAACAATCAAGACGATCGGAT
LOC_Os03g05720
Os.9622.1.S1_at--685--5491Chr03:2830555..2830579 (25 bp)
GAACATCCGGTGAGAGCTGAGCTTT
LOC_Os03g05720
Os.9622.1.S1_at--1107--8671Chr03:2830735..2830759 (25 bp)
TGTGCATTTGCTCAATCCTACGTAC
LOC_Os03g05720
Target Sequence 
AAGGAGTGGTCTATGGTTCCTTTGAAGGTTGAGCTTGTTTGTAGGGTTTGCCTAGTGCTGCTTCAAACACACCACAGCCA
ATTAACTACGACACCATCTGCAAGATCGATACTTACAGAACTGAAAGGCATTCTTTACAGTAGAGTAAAGGAATGCAAGG
ATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGAT
GCAAGAGCGAAGCTGATGGAGATCAGGCAGGAACAATCAAGACGATCGGATAGGTCAGATGGGGNCTGAAAAAAGGNAAA
AAGAAAAAGCGAAGAACATCCGGTGAGAGCTGAGCTTTGTGGGCGAGGCAAAGTAGTTTTTTTTTTNGTCGTAGCATACA
AACGATATATCGGCGTGCTCATATTGTGTCTACATGAGCACGACAGAATTTTGGCATATCGAGTGTAAAATCAAAACGCG
CGTTGCGCCAAATCTTTTAGATGTAATAGCAGAATGTGCATTTGCTCAATCCTACGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis