Browse Element(s) Details


Os.9753.1.S1_at

Description gb:AK073437.1
DB_XREF= gi:32983460
TID=Os.9753.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042K24, full insert sequence.
FL= gb:AK073437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0324011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0008283biological_processcell proliferation
GO:0003723molecular_functionRNA binding
GO:0003727molecular_functionsingle-stranded RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9753.1.S1_at--603--2091Chr07:1281070..1281094 (25 bp)
ACATCCCTACTATCCTGGTGTATAT
LOC_Os07g03240
Os.9753.1.S1_at--193--8031Chr07:1281107..1281131 (25 bp)
GGAGGTTATCCCTATGCGAATGCAT
LOC_Os07g03240
Os.9753.1.S1_at--906--3551Chr07:1281129..1281153 (25 bp)
CATATTCAAACATGGGAGCCCCTGC
LOC_Os07g03240
Os.9753.1.S1_at--401--3211Chr07:1281177..1281201 (25 bp)
CAAGGCGTCCAGTTTATGGTGCATA
LOC_Os07g03240
Os.9753.1.S1_at--436--9211Chr07:1281205..1281229 (25 bp)
TCCAATGTTTCCAGGGTACGGCGTT
LOC_Os07g03240
Os.9753.1.S1_at--880--9031Chr07:1281253..1281277 (25 bp)
TGCACCCTCTATTCAGCATGATAGT
LOC_Os07g03240
Os.9753.1.S1_at--843--2811Chr07:1281327..1281351 (25 bp)
AAGTTGACAGTGCTGCTTCCGTTGC
LOC_Os07g03240
Os.9753.1.S1_at--213--4911Chr07:1283231..1283255 (25 bp)
GCTTCATCTGCCTGTACACTGAAAA
LOC_Os07g03240
Os.9753.1.S1_at--19--2591Chr07:1283254..1283278 (25 bp)
AACGTGCAAGTTGACCTCACTGCTT
LOC_Os07g03240
Os.9753.1.S1_at--804--3331Chr07:1283271..1283295 (25 bp)
CACTGCTTCTTGTACCGATGTTTAA
LOC_Os07g03240
Os.9753.1.S1_at--1050--3611Chr07:1283345..1283369 (25 bp)
CTTGTGCTATCTCGTTTTTGTGTCA
LOC_Os07g03240
Target Sequence 
ACATCCCTACTATCCTGGTGTATATTATGGTATGGGAGGAGGTTATCCCTATGCGAATGCATATTCAAACATGGGAGCCC
CTGCTAATATTCCTCCAGGCATGATGACAAGGCGTCCAGTTTATGGTGCATATCCTCCAATGTTTCCAGGGTACGGCGTT
ATATATAGAGGTTATGTGGGTGCTGCACCCTCTATTCAGCATGATAGTAATGGTGGGAGCGATAGCAAAAAGGATCAAAC
TTCAGTAGATGTACAAGAAGTTGACAGTGCTGCTTCCGTTGCAACAAAACTTGAGTTTATGAAGCTAGGGTCACAATGAC
TTTCTGGACAAATTACTTCTAAATTGATGACACCAGAGTTCGACATTTTGGGAACCCTCAATTGTGAAGACTTGAGCTGA
GATTCTTTGGTTGACAAGTACATCATTGGAATTCAACTTACCCACCCTCATTCCTTGCTTCATCTGCCTGTACACTGAAA
ACGTGCAAGTTGACCTCACTGCTTCTTGTACCGATGTTTAAATTCTTTGTTGATTTAATGTACCAGGATCAGAACATCCA
ATCCTAATTGCTTGTGCTATCTCGTTTTTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis