Browse Element(s) Details


Os.9796.1.S1_at

Description gb:AK120617.1
DB_XREF= gi:37990240
TID=Os.9796.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine palmitoyltransferase (OSJNBa0052O12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152B12, full insert sequence.
FL= gb:AK120617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7038011/11Serine palmitoyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70340Os.28507.1.S1_at11/111+41070852..41077671expressed protein
LOC_Os01g70350OsAffx.21841.1.S1_at9/111+41082603..41083734hypothetical protein
LOC_Os01g70360Os.42735.1.S1_at11/111+41086484..41090638Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70370OsAffx.23988.1.S1_s_at11/111+41093794..41098463Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70380Os.9796.1.S1_at11/111+41101347..41105453Serine palmitoyltransferase 2, putative, expressed
LOC_Os01g70390Os.20144.3.S1_at9/111+41107291..41111719expressed protein
LOC_Os01g70400Os.20144.1.S1_a_at11/111+41111973..41113613expressed protein
LOC_Os01g70410Os.16047.1.S1_at11/111+41113087..41115739Protein kinase domain containing protein, expressed
LOC_Os01g70420NANA1+41117049..41119258hypothetical protein
LOC_Os01g70430Os.28544.2.S1_x_at11/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70430Os.28544.1.S1_at10/111+41120973..41123812oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os01g70440Os.34543.1.S1_at11/111+41124729..41125358expressed protein
LOC_Os01g70450NANA1+41129495..41131500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9796.1.S1_at--1020--8811Chr01:41102023..41102047 (25 bp)
TGTTGTTACTGTTGCATTTCCTGCT
LOC_Os01g70380
Os.9796.1.S1_at--351--1711Chr01:41101996..41102020 (25 bp)
ACCACTACTGCTTGCCAGAGCTAGG
LOC_Os01g70380
Os.9796.1.S1_at--599--271Chr01:41101971..41101995 (25 bp)
ATATGTATCTCAGCTTCCCACTCAA
LOC_Os01g70380
Os.9796.1.S1_at--358--8851Chr01:41101688..41101712 (25 bp)
TGATCTAGGCAGTGTGCCATGCCTC
LOC_Os01g70380
Os.9796.1.S1_at--832--7531Chr01:41101614..41101638 (25 bp)
GTGGCTTAGATCTGTACAGCTTGTA
LOC_Os01g70380
Os.9796.1.S1_at--222--3411Chr01:41101598..41101622 (25 bp)
CAGCTTGTATTATCATCCATCATAG
LOC_Os01g70380
Os.9796.1.S1_at--616--3511Chr01:41101472..41101496 (25 bp)
CATGTAGAGACTCTTCCTCTTTTGA
LOC_Os01g70380
Os.9796.1.S1_at--957--4291Chr01:41101457..41101481 (25 bp)
CCTCTTTTGATTTTAGCTTCCTTTG
LOC_Os01g70380
Os.9796.1.S1_at--1153--4891Chr01:41101442..41101466 (25 bp)
GCTTCCTTTGTAGATGCAACGTCAG
LOC_Os01g70380
Os.9796.1.S1_at--924--2571Chr01:41101425..41101449 (25 bp)
AACGTCAGTTGCATCGATTGTGTGT
LOC_Os01g70380
Os.9796.1.S1_at--120--8691Chr01:41101380..41101404 (25 bp)
TGTGAGGTCTGGTTGCTGTGATCAA
LOC_Os01g70380
Target Sequence 
TGTTGTTACTGTTGCATTTCCTGCTACACCACTACTGCTTGCCAGAGCTAGGATATGTATCTCAGCTTCCCACTCAAGGG
AAGATCTTATTAAAGGATTGGAGGTTATCAGCAAAGTTGGTGACCNTCGTGGGAATCAAATACTTCCCAGTGGAACATGA
AAAGACTGCATCTGTTGAGAAACTGAAGAAGCTTCAATGAACACCTACAACCAGAAGAAATATACTGGGTGATCTAGGCA
GTGTGCCATGCCTCGGTTCGGCTCATGTGCCTCGGACCCTTTTGATTTTCCTTTGTTTCTGAAGTGGCTTAGATCTGTAC
AGCTTGTATTATCATCCATCATAGTCCAAAACACAACACAATGATANGACACTGTTTTGTCGAGTTCAGAGGAAGCAAAA
GTTTCGCTGTTACAGCTCTGAATCTTGCGAGTAAAGTGTCTGAAATCATGTAGAGACTCTTCCTCTTTTGATTTTAGCTT
CCTTTGTAGATGCAACGTCAGTTGCATCGATTGTGTGTGAAGTAAGCTTCACTCATAGTGTGAGGTCTGGTTGCTGTGAT
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis