Browse Element(s) Details


Os.9946.1.S1_at

Description gb:AK073778.1
DB_XREF= gi:32983801
TID=Os.9946.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070D07, full insert sequence.
FL= gb:AK073778.1 gb:AK101781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1483011/1150S ribosomal protein L3-2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9946.1.S1_at--1067--6811Chr01:8292294..8292318 (25 bp)
GTTTATCAAATAGACCCTGCCAGGA
LOC_Os01g14830
Os.9946.1.S1_at--882--7251Chr01:8292441..8292465 (25 bp)
GTCCTCAAGGCAGCTTTGTTTTTGT
LOC_Os01g14830
Os.9946.1.S1_at--195--1431Chr01:8292483..8292507 (25 bp)
AGAAACCCGACATAGCTAAGCTGCC
LOC_Os01g14830
Os.9946.1.S1_at--720--9791Chr01:8292499..8292523 (25 bp)
TAAGCTGCCTTTCCCAACATATTTC
LOC_Os01g14830
Os.9946.1.S1_at--553--8611Chr01:8292565..8292589 (25 bp)
TGGTGACATCGACCCATTCATGGTA
LOC_Os01g14830
Os.9946.1.S1_at--150--10811Chr01:8292627..8292651 (25 bp)
TTGTTTTCTGTGCACTTCAGCTTGA
LOC_Os01g14830
Os.9946.1.S1_at--312--10531Chr01:8292642..8292666 (25 bp)
TTCAGCTTGACCATCCGACAAAATT
LOC_Os01g14830
Os.9946.1.S1_at--210--6591Chr01:8292701..8292725 (25 bp)
GATTGCGAGTCATCCCATTACTGGC
LOC_Os01g14830
Os.9946.1.S1_at--387--4171Chr01:8292727..8292751 (25 bp)
CGCCTCTGATCAATGTTGTTCCATG
LOC_Os01g14830
Os.9946.1.S1_at--384--6651Chr01:8292741..8292765 (25 bp)
GTTGTTCCATGTACACTACTTGGCA
LOC_Os01g14830
Os.9946.1.S1_at--667--8771Chr01:8292927..8292951 (25 bp)
TGTATTCTCCAATTCAGGCTAGGTT
LOC_Os01g14830
Target Sequence 
GTTTATCAAATAGACCCTGCCAGGAACTTATTGTATCTGAAAGGCCAGGTTCCTGGTCCTCAAGGCAGCTTTGTTTTTGT
TAAGGACTCAATATACAAGAAACCCGACATAGCTAAGCTGCCTTTCCCAACATATTTCTCACAAGAAGGTGAGTCGGAGG
AGCTCCTCGTCGCTGATCTTGGTGACATCGACCCATTCATGGTAGCGGATTAAGATTAGGGCCTACTTTGGAAGGGTCCT
TTTGTTTTCTGTGCACTTCAGCTTGACCATCCGACAAAATTGTTAAATTTTGCATGGATATATGAGTAGTTGCTGGATTG
CGAGTCATCCCATTACTGGCCCGCCTCTGATCAATGTTGTTCCATGTACACTACTTGGCAAATGTGCCAGGGCCCTAACT
CGATTAGGGTTTTGAGCTGATTGTTTGACAAAATGGAACTTTTTTGTTCAATAATTTGTGTAATCTAAGCTTCAGATAGA
TATATAAAATGGGAAAGATTCACCGCAGAGATAGATGTATGTCAGCATTGTATTGCAGTTCTGTATTCTCCAATTCAGGC
TAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis