Browse Element(s) Details


OsAffx.10404.1.S1_at

Description tigr:9631.m06265
TID=OsAffx.10404.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6332011/11SAM domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63280Os.10657.1.S1_at11/113+35705897..35707930regulatory protein, putative, expressed
LOC_Os03g63290Os.25462.1.S1_at11/113+35708735..35711180oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g63300Os.33275.1.S1_at11/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63300Os.26818.2.S1_at1/113+35711634..35716393NLI interacting factor, putative, expressed
LOC_Os03g63310Os.44934.1.S1_at11/113+35716842..35720269Cytochrome P450 71E1, putative, expressed
LOC_Os03g63320OsAffx.10404.1.S1_at11/113+35724564..35725334SAM domain family protein, expressed
LOC_Os03g63330Os.46611.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.46611.1.S1_x_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.27606.1.S1_at11/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63330Os.5265.1.S1_x_at1/113+35728998..35734424aspartate kinase family protein, expressed
LOC_Os03g63350OsAffx.13592.1.S1_at11/113+35738193..35739308hypothetical protein
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10404.1.S1_at--2--3951Chr03:35724921..35724945 (25 bp)
CGGCACCGACGGATACGAGGAAGAA
LOC_Os03g63320
OsAffx.10404.1.S1_at--122--8191Chr03:35724903..35724927 (25 bp)
GGAAGAAGCGGAGCATTACTATGAT
LOC_Os03g63320
OsAffx.10404.1.S1_at--823--9891Chr03:35724887..35724911 (25 bp)
TACTATGATGATGCCGACCAGTCCG
LOC_Os03g63320
OsAffx.10404.1.S1_at--628--831Chr03:35724715..35724739 (25 bp)
ATGGACTTGGGCTCTCTCGGTACGC
LOC_Os03g63320
OsAffx.10404.1.S1_at--911--9431Chr03:35724699..35724723 (25 bp)
TCGGTACGCGCCAGTGTTCGAGATC
LOC_Os03g63320
OsAffx.10404.1.S1_at--399--4391Chr03:35724690..35724714 (25 bp)
GCCAGTGTTCGAGATCCACGAGGTA
LOC_Os03g63320
OsAffx.10404.1.S1_at--1018--6691Chr03:35724684..35724708 (25 bp)
GTTCGAGATCCACGAGGTAGACGAC
LOC_Os03g63320
OsAffx.10404.1.S1_at--1048--7771Chr03:35724657..35724681 (25 bp)
GGTGCTCCCGCTGCTAACGTTGGAA
LOC_Os03g63320
OsAffx.10404.1.S1_at--753--4211Chr03:35724650..35724674 (25 bp)
CCGCTGCTAACGTTGGAAGATCTCA
LOC_Os03g63320
OsAffx.10404.1.S1_at--291--4971Chr03:35724616..35724640 (25 bp)
GCATCGGCGCCGTTGGGTCGAGGAG
LOC_Os03g63320
OsAffx.10404.1.S1_at--768--6191Chr03:35724594..35724618 (25 bp)
GAGGAAGTTGTATGCCGCCATCCAG
LOC_Os03g63320
Target Sequence 
CGGCACCGACGGATACGAGGAAGAAGCGGAGCATTACTATGATGATGCCGACCAGTCCGACTCGGCCGCCGCCGCCGCTG
CCAGGGCTAGGGTTTCGGGGAGCCGCGACGCCAGCGGCGACGAGTCGGACGGCGTGGCGGATTGGGGTCTCCCGAACGGC
CGGCTCCCTGGGTCCATGGGGTATGGTGGCGTGAAGGCGTGGCTGGATGGACTTGGGCTCTCTCGGTACGCGCCAGTGTT
CGAGATCCACGAGGTAGACGACGAGGTGCTCCCGCTGCTAACGTTGGAAGATCTCAAGGACATGGGCATCGGCGCCGTTG
GGTCGAGGAGGAAGTTGTATGCCGCCATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis