Browse Element(s) Details


OsAffx.10442.1.S1_s_at

Description gb:NM_184880.1
DB_XREF= gi:34896849
GEN=OSJNBa0003G23.10
TID=OsAffx.10442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative heat shock protein (OSJNBa0003G23.10), mRNA.
PROD=putative heat shock protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4767010/11TPR Domain containing protein
LOC_Os03g477022/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g476862/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47640Os.50633.1.S1_at10/113+26927777..26935249hypothetical protein
LOC_Os03g47640Os.45041.1.S1_x_at5/113+26927777..26935249hypothetical protein
LOC_Os03g47650OsAffx.22672.1.S1_at10/113+26937495..26944710TPR Domain containing protein, expressed
LOC_Os03g47670OsAffx.10442.1.S1_s_at10/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.1.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.10442.2.S1_at9/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47670OsAffx.1626.1.S1_at2/113+26949908..26955138TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_x_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.2.S1_at11/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.22673.1.S1_at9/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.2557.1.S1_x_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47686OsAffx.10442.1.S1_s_at2/113+26959921..26969996TPR Domain containing protein
LOC_Os03g47702OsAffx.1626.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.28851.1.S1_at11/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.2.S1_at4/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.10442.1.S1_s_at2/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.20341.2.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22674.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.24556.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702OsAffx.22673.2.S1_x_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g47702Os.9154.1.S1_at1/113+26970948..26991817retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10442.1.S1_s_at--747--5891Chr03:26951956..26951980 (25 bp)
GAGCGGACTTACACCTATAGAAATT
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--32--8053Chr03:26983616..26983640 (25 bp)
GGAGATTCTATTTCCTTTCACTTCC
LOC_Os03g47702
OsAffx.10442.1.S1_s_at--814--2052Chr03:26952029..26952053 (25 bp)
ACTTCCCCTGTCAGAGCAGTAACAA
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--1093--5571Chr03:26952085..26952109 (25 bp)
GAAATCGAGACGCTTGATTCCCAAG
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--881--8111Chr03:26953215..26953239 (25 bp)
GGACTACCTTGCTGCATCAAAGATC
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--34--6431NONE
GATCTACACTAAGGCGCTTGAGCTA
NONE
OsAffx.10442.1.S1_s_at--972--8891Chr03:26953964..26953988 (25 bp)
TGAGCTAGACTATTTTGATGCAACC
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--301--6331Chr03:26953980..26954004 (25 bp)
GATGCAACCCTGTATTCAAACAGAA
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--722--1811Chr03:26953999..26954023 (25 bp)
ACAGAAGCCTTTGTTACCTACAAAT
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--260--5133Chr03:26954031..26954055 (25 bp)
GCACAAAAGGCTTTGCTTGACGCAA
LOC_Os03g47670
OsAffx.10442.1.S1_s_at--982--2411Chr03:26954066..26954090 (25 bp)
AAAACTGCGGCCTAAGTGGATGAAA
LOC_Os03g47670
Target Sequence 
GAGCGGACTTACACCTATAGAAATTGCTGCAAGTGTTGGAAGAAGAGATCATGTGGAGATTCTATTTCCTTTCACTTCCC
CTGTCAGAGCAGTAACAAACTGGACAGTTGAAGGAATTATTGCTCATGGGAAATCGAGACGCTTGATTCCCAAGGGTGAG
TCATGTAGCAAGGTCAGTGACAGAAAGGCTGAGCTAAAATCACAGGGAGAAAAAGCCGTTAAGAGAAAGGACTACCTTGC
TGCATCAAAGATCTACACTAAGGCGCTTGAGCTAGACTATTTTGATGCAACCCTGTATTCAAACAGAAGCCTTTGTTACC
TACAAATTGGAAAAGCACAAAAGGCTTTGCTTGACGCAAAAAAATGTGTAAAACTGCGGCCTAAGTGGATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10442.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis