Browse Element(s) Details


OsAffx.10931.2.S1_s_at

Description gb:NM_189607.1
DB_XREF= gi:34906297
TID=OsAffx.10931.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g092009/11hypothetical protein
LOC_Os01g089809/11hypothetical protein
LOC_Os11g126808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10931.2.S1_s_at--18--8555Chr11:7144822..7144846 (25 bp)
TGGAGAAATCGACGCCAGGAGCTTC
NONE
OsAffx.10931.2.S1_s_at--852--1414Chr11:7144825..7144849 (25 bp)
AGAAATCGACGCCAGGAGCTTCGTG
NONE
OsAffx.10931.2.S1_s_at--1090--695Chr11:7144931..7144955 (25 bp)
ATGAGGCAGACCGAGACGACGGCGA
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--591--7095Chr11:7144982..7145006 (25 bp)
GTCGGCCCCAAATCGAGGAGGCGGT
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--134--4776Chr11:7145071..7145095 (25 bp)
GCTGCATCGCCGCTTGGAGCAACGC
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--717--9056Chr11:7145073..7145097 (25 bp)
TGCATCGCCGCTTGGAGCAACGCCG
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--128--4176Chr11:7145099..7145123 (25 bp)
CGCCTGCGCCTGAGAGGAAGGGCAT
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--442--535Chr06:4628605..4628686 (25 bp)
ATCGCTGCCTGGAGCAACACCGACG
LOC_Os06g09200
OsAffx.10931.2.S1_s_at--154--956Chr11:7145176..7145200 (25 bp)
AGGAAGGGGACGACCGCTGCATCTC
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--715--9056Chr11:7145193..7145217 (25 bp)
TGCATCTCCGCGTGGAACTCAGTCG
LOC_Os11g12680
OsAffx.10931.2.S1_s_at--73--9516Chr11:7145197..7145221 (25 bp)
TCTCCGCGTGGAACTCAGTCGACGA
LOC_Os11g12680
Target Sequence 
TGGAGAAATCGACGCCAGGAGCTTCGTGGAGGTTGAGGATGAGGCAGACCGAGACGACGGCGAGGCGGCGGTGCGGGGCG
CAGAGGGCCGTCGGCCCCAAATCGAGGAGGCGGTGGTCGACGTGCGGGCGCCCCCTGGAACAACGCCGACGCCGACGCCT
GCGAGGAAGAGGACGGCGGCTGCATCGCCGCTTGGAGCAACGCCGGCGCCTGCGCCTGAGAGGAAGGGCATGTCCGCTGC
ATCGCTGCCTGGAGCAACACCGACGCCGACCTCTGCGACCGAGAGGAAGGGGACGACCGCTGCATCTCCGCGTGGAACTC
AGTCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10931.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis