Browse Element(s) Details


OsAffx.10931.4.A1_at

Description tigr:9634.m00873
TID=OsAffx.10931.4
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0920010/11hypothetical protein
LOC_Os04g348201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g126801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09140NANA6+4603421..4604035hypothetical protein
LOC_Os06g09150NANA6+4604515..4605856transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09160OsAffx.30261.2.S1_s_at11/116+4606807..4607109hypothetical protein
LOC_Os06g09170Os.53571.1.S1_at11/116+4611262..4614893Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g09180Os.49853.1.S1_a_at11/116+4615609..4617146Protein kinase domain containing protein, expressed
LOC_Os06g09190Os.57190.1.S1_at11/116+4623189..4624518Protein kinase domain containing protein, expressed
LOC_Os06g09200OsAffx.10931.4.A1_at10/116+4628402..4628992hypothetical protein
LOC_Os06g09200OsAffx.10931.2.S1_s_at9/116+4628402..4628992hypothetical protein
LOC_Os06g09210Os.54734.1.S1_at3/116+4629849..4631544Cytochrome P450 family protein, expressed
LOC_Os06g09220Os.54734.1.S1_at10/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09220OsAffx.15322.1.S1_x_at1/116+4632667..4634470Cytochrome P450 family protein, expressed
LOC_Os06g09230OsAffx.15330.1.S1_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09230OsAffx.15330.1.S1_x_at11/116+4640564..4643874serine threonine kinase, putative, expressed
LOC_Os06g09240NANA6+4646955..4648522Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os06g09250OsAffx.31228.1.S1_at2/116+4648582..4649154hypothetical protein
LOC_Os06g09260OsAffx.15332.1.S1_s_at11/116+4649897..4650520expressed protein
LOC_Os06g09270Os.55786.1.S1_at11/116+4652461..4654653hypro1, putative, expressed
LOC_Os06g09270OsAffx.12199.1.A1_at1/116+4652461..4654653hypro1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10931.4.A1_at--314--1116Chr11:7144863..7144887 (25 bp)
AGTGTCTCCCATGGAGCATGTCCCT
NONE
OsAffx.10931.4.A1_at--778--5934Chr11:7144876..7144900 (25 bp)
GAGCATGTCCCTCCATGGACTCTGT
LOC_Os11g12680
OsAffx.10931.4.A1_at--22--8133Chr06:4628421..4628445 (25 bp)
GGACTCTGTCGCCTGCACACCGGAG
LOC_Os06g09200
OsAffx.10931.4.A1_at--187--8714Chr06:4628427..4628451 (25 bp)
TGTCGCCTGCACACCGGAGTAGGGA
LOC_Os06g09200
OsAffx.10931.4.A1_at--730--5597Chr11:7145324..7145348 (25 bp)
GAGAAAAGGAGCGCGGGAACAATTT
NONE
OsAffx.10931.4.A1_at--522--1634Chr11:7153529..7153553 (25 bp)
AGCGACGACCGCGATTGGGAAGAAA
NONE
OsAffx.10931.4.A1_at--919--5336Chr11:7153547..7153571 (25 bp)
GAAGAAAAAATGGTTCCCTGCAAAT
NONE
OsAffx.10931.4.A1_at--844--2436Chr11:7153553..7153577 (25 bp)
AAAATGGTTCCCTGCAAATGAGTAA
NONE
OsAffx.10931.4.A1_at--1108--816Chr06:4628925..4628949 (25 bp)
ATGGTTCCCTGCAAATGAGTAACGA
LOC_Os06g09200
OsAffx.10931.4.A1_at--329--6716Chr11:7153559..7153768 (25 bp)
GTTCCCTGCAAATGAGTAACGACAT
NONE
OsAffx.10931.4.A1_at--662--2974Chr06:4628938..4628962 (25 bp)
AATGAGTAACGACATATACGGATAT
LOC_Os06g09200
Target Sequence 
AGTGTCTCCCATGGAGCATGTCCCTCCATGGACTCTGTCGCCTGCACACCGGAGTAGGGAGGTTGAGGATGAGGCAGACC
GAGACGACGGCGAGGCGGCGGTGCGGGGCGCAGAGGGCCGTCGGCCCCAAATCGAGGAGGCGGTGGTCGACGTGCGGGCG
CCCCCTGGAACAACGCCGACGCCGACGCCTGCGAGGAAGAGGACGGCGGCTGCATCGCCGCTTGGAGCAACGCCGGCGCC
TGCGCCTGAGAGGAAGGGCATGGCCGCTGCATCGCTGCCTGGAGCAACACCGACGCCGACCCCTGCGACCGAGAGGAAGG
GGACGACCGCTGCATCTCCGCGTGGAACTCAGTCGACGACNCCTGNGAGGAAGGGGTTGGCCGTTGCTTCGCCGCNTGGA
AAGCCGNTGNCGACGCCTNGGAGGAAGAGGAATTTTGTTGCTGGCGACTNGCGAGGAGGGCGAGAAAAGGAGCGCGGGAA
CAATTTTCCCCCTACGCGCGCGAGGCAGCGACGACCGCGATTGGGAAGAAAAAATGGTTCCCTGCAAATGAGTAACGACA
TATACGGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10931.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis