Browse Element(s) Details


OsAffx.11069.5.S1_x_at

Description tigr:9632.m03325
TID=OsAffx.11069.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3459011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34540Os.6272.1.S1_at10/114+20716788..20717943expressed protein
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34610Os.23113.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_x_at11/114+20753676..20760952expressed protein
LOC_Os04g34610Os.53865.1.S1_at11/114+20753676..20760952expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_x_at11/114+20762269..20765400expressed protein
LOC_Os04g34620OsAffx.26329.1.S1_at11/114+20762269..20765400expressed protein
LOC_Os04g34620Os.20989.1.S1_at10/114+20762269..20765400expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11069.5.S1_x_at--839--4511Chr04:20741094..20741118 (25 bp)
GCCCCATGGCGCTGAAACGGAAGGT
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--602--1931Chr04:20741110..20741134 (25 bp)
ACGGAAGGTGACGAACACGAACGCG
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--941--2471Chr04:20741123..20741147 (25 bp)
AACACGAACGCGGCGGCGGTAGCAA
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--835--9352Chr04:20741244..20741268 (25 bp)
TCGACACGGTGAGCCACCTGGTGGC
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--922--9491Chr04:20741274..20741298 (25 bp)
TCTCCGACGGCATCGAGCGGGAGAA
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--699--1011Chr04:20741369..20741393 (25 bp)
AGGTTCTTCCCGGTGCAGGAGATGG
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--480--4111Chr04:20741394..20741418 (25 bp)
CGAACGAGCTGAGGAGAAGCTGCTC
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--60--5411Chr04:20741409..20741433 (25 bp)
GAAGCTGCTCGAGCTCGAGGAAGCT
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--897--6171Chr04:20741447..20741471 (25 bp)
GAGGAGCACGTGTGCCTATGCCTCG
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--209--5951Chr04:20741450..20741474 (25 bp)
GAGCACGTGTGCCTATGCCTCGCCA
LOC_Os04g34590
OsAffx.11069.5.S1_x_at--887--4351Chr04:20741472..20741496 (25 bp)
CCACCATCCATAGGGCTCGACTTCT
LOC_Os04g34590
Target Sequence 
GCCCCATGGCGCTGAAACGGAAGGTGACGAACACGAACGCGGCGGCGGTAGCAAGGCCGGCGAGGCGGTGGTCCACGACG
GGGTCGCTGCTGCGGCTGCAGGAGCAGCTCGACACGGCGGCCAAGGGGACGTACGTGCTGGGGCGCGACCTCGACACGGT
GAGCCACCTGGTGGCGCGGCTCTCCGACGGCATCGAGCGGGAGAACGCCATGGCGAGGCGGTGCGCGGAGAGGGTGGCCG
CCGACAACGTCGGCGCCGCCGCCGCCGCCGGCGGGAGGTTCTTCCCGGTGCAGGAGATGGCGAACGAGCTGAGGAGAAGC
TGCTCGAGCTCGAGGAAGCTCGCGGAGGAGCTGGAGGAGCACGTGTGCCTATGCCTCGCCACCATCCATAGGGCTCGACT
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11069.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis