Browse Element(s) Details


OsAffx.11188.1.S1_at

Description tigr:9629.m02363
TID=OsAffx.11188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2445011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24410NANA1+13744337..13745641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24420OsAffx.23371.1.S1_x_at11/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.29376.1.S1_x_at2/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.22240.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.266.1.S1_at1/111+13747712..13754667expressed protein
LOC_Os01g24420OsAffx.8338.1.S1_x_at1/111+13747712..13754667expressed protein
LOC_Os01g24430Os.32188.1.S1_at11/111+13757667..13759135expressed protein
LOC_Os01g24440Os.34341.1.S1_at11/111+13761245..13762267expressed protein
LOC_Os01g24450OsAffx.11188.1.S1_at11/111+13767344..13767661hypothetical protein
LOC_Os01g24460OsAffx.11189.1.S1_at11/111+13770948..13772366Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os01g24470Os.34936.2.S1_x_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24470Os.34936.1.S1_at11/111+13777335..13782372dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g24480Os.10306.2.S1_x_at11/111+13782436..13787245expressed protein
LOC_Os01g24490Os.52333.1.S1_at11/111+13790006..13792301expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11188.1.S1_at--734--5611Chr01:13767598..13767622 (25 bp)
GACAAGCTGGGCATGCTAGCTGGAC
LOC_Os01g24450
OsAffx.11188.1.S1_at--188--3531Chr01:13767587..13767611 (25 bp)
CATGCTAGCTGGACGTGTAGGGATT
LOC_Os01g24450
OsAffx.11188.1.S1_at--693--6591Chr01:13767566..13767590 (25 bp)
GATTGAGCTCGTTGAGACTGCCACA
LOC_Os01g24450
OsAffx.11188.1.S1_at--775--6651Chr01:13767556..13767580 (25 bp)
GTTGAGACTGCCACAGAGCTTGAGA
LOC_Os01g24450
OsAffx.11188.1.S1_at--135--5931Chr01:13767541..13767565 (25 bp)
GAGCTTGAGATCCTTCTTGCCGGTG
LOC_Os01g24450
OsAffx.11188.1.S1_at--659--7671Chr01:13767475..13767499 (25 bp)
GGGTTGACCTCTGCCGCATGTTGCA
LOC_Os01g24450
OsAffx.11188.1.S1_at--737--4971Chr01:13767460..13767484 (25 bp)
GCATGTTGCATAGCTGCCATCATCA
LOC_Os01g24450
OsAffx.11188.1.S1_at--934--9991Chr01:13767450..13767474 (25 bp)
TAGCTGCCATCATCATAGTTCACCT
LOC_Os01g24450
OsAffx.11188.1.S1_at--583--10651Chr01:13767405..13767429 (25 bp)
TTCCCGGAGCAATTGAAGCCACCAT
LOC_Os01g24450
OsAffx.11188.1.S1_at--186--5431Chr01:13767391..13767415 (25 bp)
GAAGCCACCATGTTCATTGTCCTAG
LOC_Os01g24450
OsAffx.11188.1.S1_at--462--10551Chr01:13767379..13767403 (25 bp)
TTCATTGTCCTAGTTTTCCCGGAGC
LOC_Os01g24450
Target Sequence 
GACAAGCTGGGCATGCTAGCTGGACGTGTAGGGATTGAGCTCGTTGAGACTGCCACAGAGCTTGAGATCCTTCTTGCCGG
TGCTGGTTTTGATCGGGGTGGGGTTTGGTCGGATCTGGCCGCGGGGTTGACCTCTGCCGCATGTTGCATAGCTGCCATCA
TCATAGTTCACCTCCACCTCCACCATCCTAGCCTTCCCGGAGCAATTGAAGCCACCATGTTCATTGTCCTAGTTTTCCCG
GAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis