Browse Element(s) Details


OsAffx.11281.1.S1_at

Description tigr:9629.m03003
TID=OsAffx.11281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g322008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32200OsAffx.11281.1.S1_at8/111+17956635..17957625hypothetical protein
LOC_Os01g32210OsAffx.21161.1.S1_at11/111+17958886..17962537retrotransposon protein, putative, unclassified
LOC_Os01g32220OsAffx.22947.2.S1_x_at10/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.1.S1_x_at7/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.3.S1_x_at5/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.5.S1_x_at3/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32230Os.14491.2.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32230Os.47463.1.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11281.1.S1_at--998--5511NONE
GAAAAGCTGCCAAATGCAGTCTATG
NONE
OsAffx.11281.1.S1_at--223--9211NONE
TGCCAAATGCAGTCTATGTCCAAGA
NONE
OsAffx.11281.1.S1_at--525--4371NONE
CCAAATGCAGTCTATGTCCAAGAAA
NONE
OsAffx.11281.1.S1_at--239--2551Chr01:17957467..17957491 (25 bp)
AAGCTGCTAGATGTAAGTGGGCCTG
LOC_Os01g32200
OsAffx.11281.1.S1_at--952--9076Chr12:3136327..3136350 (24 bp)
TGCTAGATGTAAGTGGGCCTGGCCT
NONE
OsAffx.11281.1.S1_at--642--4251Chr01:17957488..17957512 (25 bp)
CCTGGCCTAGGAAAGGCGAGACGTT
LOC_Os01g32200
OsAffx.11281.1.S1_at--64--912Chr01:17957501..17957525 (25 bp)
AGGCGAGACGTTACAGATGTCCAGA
LOC_Os01g32200
OsAffx.11281.1.S1_at--757--5991Chr01:17957505..17957529 (25 bp)
GAGACGTTACAGATGTCCAGATAAC
LOC_Os01g32200
OsAffx.11281.1.S1_at--374--72710Chr10:11366110..11366199 (25 bp)
GTCCAGATAACTCATCAGCACTTAG
NONE
OsAffx.11281.1.S1_at--429--64712Chr11:6356026..6356117 (25 bp)
GATAACTCATCAGCACTTAGTAGAT
NONE
OsAffx.11281.1.S1_at--583--20113Chr11:6356030..6356121 (25 bp)
ACTCATCAGCACTTAGTAGATCAAA
NONE
Target Sequence 
GAAAAGCTGCCAAATGCAGTCTATGTCCAAGAAAAGCTGCTAGATGTAAGTGGGCCTGGCCTAGGAAAGGCGAGACGTTA
CAGATGTCCAGATAACTCATCAGCACTTAGTAGATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis