Browse Element(s) Details


OsAffx.11288.1.S1_at

Description gb:NM_193772.1
DB_XREF= gi:34914627
GEN=OSJNBa0054L14.11
TID=OsAffx.11288.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0054L14.11 (OSJNBa0054L14.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g328602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32830Os.26460.1.S1_a_at11/111+18340522..18343873expressed protein
LOC_Os01g32830Os.26460.2.S1_x_at10/111+18340522..18343873expressed protein
LOC_Os01g32830Os.53828.1.S1_at1/111+18340522..18343873expressed protein
LOC_Os01g32840Os.53269.1.S1_at11/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.21148.2.S1_at9/111+18348854..18351596expressed protein
LOC_Os01g32840OsAffx.18305.1.S1_x_at1/111+18348854..18351596expressed protein
LOC_Os01g32849Os.54264.1.S1_at11/111+18353418..18357190expressed protein
LOC_Os01g32860OsAffx.11288.1.S1_at2/111+18358262..18359463hypothetical protein
LOC_Os01g32870OsAffx.11289.1.S1_x_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.14751.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870OsAffx.11289.1.S1_at10/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32870Os.17037.3.S1_x_at1/111+18368605..18377086Chaperone protein dnaJ 15, putative, expressed
LOC_Os01g32880Os.2106.1.S1_a_at11/111+18378399..18381533Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11288.1.S1_at--692--4171Chr01:18359893..18359917 (25 bp)
CCCACCGTCGAAGGAGTCGATTTGC
NONE
OsAffx.11288.1.S1_at--221--3371Chr01:18359869..18359893 (25 bp)
CACCGGTTTTGATTGATGTGGAAGG
NONE
OsAffx.11288.1.S1_at--906--4252Chr01:35755209..35755517 (25 bp)
CCGGTTTTATGGTTAGAGAGATGAT
NONE
OsAffx.11288.1.S1_at--561--1351Chr01:18359733..18359844 (25 bp)
AGAGATGATTCGATCGAGGCCGACG
NONE
OsAffx.11288.1.S1_at--294--8391Chr01:18359707..18359731 (25 bp)
GGCGACGATGCACACAGCCACGTGC
NONE
OsAffx.11288.1.S1_at--917--1691Chr01:18359692..18359716 (25 bp)
AGCCACGTGCCATCCTGGCGGAGAT
NONE
OsAffx.11288.1.S1_at--971--551Chr01:18359681..18359705 (25 bp)
ATCCTGGCGGAGATGCGGACTCACA
NONE
OsAffx.11288.1.S1_at--367--8051Chr01:18359673..18359697 (25 bp)
GGAGATGCGGACTCACACGAACGGA
NONE
OsAffx.11288.1.S1_at--762--3951Chr01:18359666..18359690 (25 bp)
CGGACTCACACGAACGGAGGGCGAT
NONE
OsAffx.11288.1.S1_at--510--8311Chr01:18358371..18358395 (25 bp)
GGCTAAATCAACATGTTGGTCCTAT
LOC_Os01g32860
OsAffx.11288.1.S1_at--471--10851Chr01:18358356..18358380 (25 bp)
TTGGTCCTATCATCATCTGCATCCT
LOC_Os01g32860
Target Sequence 
CCCACCGTCGAAGGAGTCGATTTGCACCGGTTTTGATTGATGTGGAAGGTGTTATACCCGGTTTTATGGTTAGAGAGATG
ATTCGATCGAGGCCGACGAGGCGACGATGCACACAGCCACGTGCCATCCTGGCGGAGATGCGGACTCACACGAACGGAGG
GCGATGGANNGNNGNNNNCNNNNCNNTGCNNNCNNNNNNGNNNNGNNGNNGGCTAAATCAACATGTTGGTCCTATCATCA
TCTGCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis