Browse Element(s) Details

OsAffx.11357.1.S1_at

Description

tigr:9629.m03487
TID=OsAffx.11357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g36900	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g36860	Os.11734.1.S1_a_at	11/11	1	+	20849294..20855064	RNA helicase DB10, putative, expressed
LOC_Os01g36860	Os.11734.3.S1_x_at	5/11	1	+	20849294..20855064	RNA helicase DB10, putative, expressed
LOC_Os01g36870	Os.12434.1.S1_at	11/11	1	+	20861935..20865792	phox domain-containing protein, putative, expressed
LOC_Os01g36880	OsAffx.2170.1.S1_s_at	10/11	1	+	20866438..20867287	hypothetical protein
LOC_Os01g36890	Os.14280.1.S1_a_at	11/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.14280.3.S1_x_at	11/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.14280.3.S1_at	11/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.14280.1.S1_at	11/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.14280.1.S1_x_at	11/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.50777.1.S1_at	4/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36890	Os.14280.2.S1_x_at	4/11	1	+	20867676..20873945	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36900	OsAffx.11357.1.S1_at	11/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	OsAffx.22442.1.S1_x_at	3/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	Os.6502.1.A1_at	1/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	Os.6502.1.A1_x_at	1/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	OsAffx.3521.1.S1_at	1/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	OsAffx.3521.1.S1_x_at	1/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36900	OsAffx.1331.1.S1_at	1/11	1	+	20876458..20885520	hypothetical protein
LOC_Os01g36910	Os.35344.3.S1_x_at	10/11	1	+	20892716..20896877	Transposable element protein, putative, MuDR
LOC_Os01g36910	Os.35344.18.S1_x_at	8/11	1	+	20892716..20896877	Transposable element protein, putative, MuDR
LOC_Os01g36910	OsAffx.22940.5.S1_x_at	3/11	1	+	20892716..20896877	Transposable element protein, putative, MuDR
LOC_Os01g36920	Os.14280.2.S1_x_at	11/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.14280.1.S1_a_at	11/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.14280.2.S1_at	9/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.50777.1.S1_at	9/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.14280.1.S1_x_at	8/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.14280.1.S1_at	6/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920	Os.14280.3.S1_x_at	5/11	1	+	20897826..20903053	Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930	Os.40926.1.S1_x_at	11/11	1	+	20908462..20916430	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930	Os.40926.1.S1_at	11/11	1	+	20908462..20916430	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930	Os.9089.1.S1_at	9/11	1	+	20908462..20916430	Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.11357.1.S1_at--635--919	1	Chr01:20879949..20879973 (25 bp)	TCCAGGATGGACTCAATTATCTTTG	LOC_Os01g36900
OsAffx.11357.1.S1_at--952--1023	1	Chr01:20879928..20879952 (25 bp)	TTTGGAGGTACTACAAGTGTCGTTC	LOC_Os01g36900
OsAffx.11357.1.S1_at--999--673	1	Chr01:20879908..20879931 (24 bp)	GTTCTTGCTACGACACCTGTCAAGA	LOC_Os01g36900
OsAffx.11357.1.S1_at--461--31	1	Chr01:20876716..20876740 (25 bp)	ATACCTCAAGGTAGTGCATCAAATG	LOC_Os01g36900
OsAffx.11357.1.S1_at--20--313	1	Chr01:20876641..20876665 (25 bp)	AATTTCTACACCAATTGGGTCTACT	LOC_Os01g36900
OsAffx.11357.1.S1_at--66--711	1	Chr01:20876623..20876647 (25 bp)	GTCTACTACCGTGTTGGATCCTGAA	LOC_Os01g36900
OsAffx.11357.1.S1_at--49--665	1	Chr01:20876553..20876577 (25 bp)	GTTGTATCATACTGCTTCAATGCCA	LOC_Os01g36900
OsAffx.11357.1.S1_at--249--1051	1	Chr01:20876538..20876562 (25 bp)	TTCAATGCCAGACATACAGTTTGTT	LOC_Os01g36900
OsAffx.11357.1.S1_at--1056--685	1	Chr01:20876520..20876544 (25 bp)	GTTTGTTGTGTGTTTCTATACTCGA	LOC_Os01g36900
OsAffx.11357.1.S1_at--229--991	1	Chr01:20876502..20876526 (25 bp)	TACTCGATTTTAAGCTTCTCCACGT	LOC_Os01g36900
OsAffx.11357.1.S1_at--1040--1049	1	Chr01:20876493..20876517 (25 bp)	TTAAGCTTCTCCACGTGTTTCGCAT	LOC_Os01g36900

Target Sequence

TCCAGGATGGACTCAATTATCTTTGGAGGTACTACAAGTGTCGTTCTTGCTACGACACCTGTCAAGATTTTACATATGGA
CACTATTGGTCCAGCTAGAGTGCAATATGTTGGAGGAAGGTGGTATGTGTTGGTTATTGTTGACGATTTTTCTAGAAATT
ATTGTGTTTTCTTCATGATTTATATGGATGATATCATCTTTGGTTGTTCATCTTACGCTTTGGTTGTGGAGTTTTCTGAG
ATAATGCGTAGGGAATTTAAGTTGAGCATGATGGGTGATTTATCGTACTTTTTGGATTGCAAATTAAGCGAATACCTCAA
GGTAGTGCATCAAATGAAGTACATCAAGAATCTTTTAAGGCGTTTCAAGATGCAGAATTGCAAGCCAATTTCTACACCAA
TTGGGTCTACTACCGTGTTGGATCCTGAAGAAAATGATGAAGTTGTTTATCAAAAGGAGTACAAAAGTATCATTGTTGTA
TCATACTGCTTCAATGCCAGACATACAGTTTGTTGTGTGTTTCTATACTCGATTTTAAGCTTCTCCACGTGTTTCGCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis