Browse Element(s) Details


OsAffx.11397.1.S1_at

Description tigr:9629.m03812
TID=OsAffx.11397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3999011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39940NANA1+22852230..22856151hypothetical protein
LOC_Os01g39950NANA1+22860762..22861298hypothetical protein
LOC_Os01g39960Os.24901.1.A1_at11/111+22861853..22865590Lycopene epsilon cyclase, chloroplast precursor, putative, expressed
LOC_Os01g39970Os.49687.1.S1_x_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970Os.49687.1.S1_at11/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39970OsAffx.15330.1.S1_x_at2/111+22865845..22869073Protein kinase domain containing protein, expressed
LOC_Os01g39980OsAffx.32072.2.S1_x_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.2.S1_at10/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_x_at6/111+22870540..22872308hypothetical protein
LOC_Os01g39980OsAffx.32072.1.S1_at3/111+22870540..22872308hypothetical protein
LOC_Os01g39990OsAffx.11397.1.S1_at11/111+22879915..22881313hypothetical protein
LOC_Os01g40000Os.27778.3.S1_x_at11/111+22884299..22888525expressed protein
LOC_Os01g40000Os.27778.2.S1_at11/111+22884299..22888525expressed protein
LOC_Os01g40010Os.46012.2.S1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.27088.1.A1_x_at6/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.46012.3.S1_x_at3/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.10263.1.S1_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.727.1.S1_x_at2/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010Os.45902.1.A1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40010OsAffx.10222.1.S1_x_at1/111+22893594..22900903retrotransposon protein, putative, unclassified
LOC_Os01g40020OsAffx.11398.1.S1_at11/111+22902308..22903684hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11397.1.S1_at--202--6172Chr01:22880547..22880571 (25 bp)
GAGGATTCTGCTCATCCATTGCAAA
LOC_Os01g39990
OsAffx.11397.1.S1_at--1148--10071Chr01:22880472..22880496 (25 bp)
TAGGGACAACACAAGCACTCAAGCT
LOC_Os01g39990
OsAffx.11397.1.S1_at--1044--8211Chr01:22880442..22880466 (25 bp)
GGCTCAAACGCCACGAGTTCTGGTA
LOC_Os01g39990
OsAffx.11397.1.S1_at--197--1172Chr01:22880427..22880451 (25 bp)
AGTTCTGGTACTTCTTCCGAACCAT
LOC_Os01g39990
OsAffx.11397.1.S1_at--728--5431Chr01:22880409..22880433 (25 bp)
GAACCATTGCCTTTGGAACTGCAGA
LOC_Os01g39990
OsAffx.11397.1.S1_at--646--5491Chr01:22880377..22880401 (25 bp)
GAACATCCAGAGCTACTGCGTATCG
LOC_Os01g39990
OsAffx.11397.1.S1_at--986--1511Chr01:22880233..22880257 (25 bp)
AGCAGTGGAACTTCAGCTTCTTGCC
LOC_Os01g39990
OsAffx.11397.1.S1_at--554--10791Chr01:22880189..22880213 (25 bp)
TTGTTAGCAATAGCCGCCACTACTA
LOC_Os01g39990
OsAffx.11397.1.S1_at--598--471Chr01:22880165..22880189 (25 bp)
ATCTGTCTGGTCACAGTGATGGCCC
LOC_Os01g39990
OsAffx.11397.1.S1_at--978--611Chr01:22880055..22880079 (25 bp)
ATGCTGATCAGAACCAATGCCTTTT
LOC_Os01g39990
OsAffx.11397.1.S1_at--754--3091Chr01:22879993..22880017 (25 bp)
AATACGCCCCTATTATTGCTACATA
LOC_Os01g39990
Target Sequence 
GAGGATTCTGCTCATCCATTGCAAATGGTTGCAGCAAAATGATAGTCATCAGTAGATCGGAGACGATCTCAAGGTTAGGG
ACAACACAAGCACTCAAGCTCAAGAGGCTCAAACGCCACGAGTTCTGGTACTTCTTCCGAACCATTGCCTTTGGAACTGC
AGATCCGGAAGAACATCCAGAGCTACTGCGTATCGCCAGGAGGATTGCAACAACAGATCAAAGGTTCATCAAGAAAGCAG
TGGAACTTCAGCTTCTTGCCTGTGGTGGGAGTTGGGACATTGTTAGCAATAGCCGCCACTACTATCTGTCTGGTCACAGT
GATGGCCCTCTCCATCTGTGCAATGATGGGTACAAAACTGTTGCAGCTGGTTGTTTGGTGAATGATGAACTACCAAGAAT
AATAGCAGATGACATGCTGATCAGAACCAATGCCTTTTCTGAAGGCAGTTTTGATATCCTACGATGGAAGTCTCCAATAC
GCCCCTATTATTGCTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis