Browse Element(s) Details


OsAffx.11535.1.S1_at

Description tigr:9629.m04805
TID=OsAffx.11535.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4972011/11glutathione S-transferase GSTU6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49670Os.7027.1.S1_a_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49670Os.7027.1.S1_s_at11/111+28868405..28872257Cytidylyltransferase family protein, expressed
LOC_Os01g49680Os.32672.1.S1_x_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.2.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49680Os.32672.3.S1_at10/111+28875541..28880596DNA repair helicase ercc3, putative, expressed
LOC_Os01g49690Os.18690.1.S1_at11/111+28882793..28887542Serine/threonine protein phosphatase 6, putative, expressed
LOC_Os01g49700OsAffx.2285.1.S1_at11/111+28888541..28888850hypothetical protein
LOC_Os01g49710Os.38022.2.S1_x_at11/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49710Os.38022.1.S1_at3/111+28893636..28894510Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os01g49720OsAffx.11535.1.S1_at11/111+28895823..28896613glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49730Os.57153.1.S1_at11/111+28898884..28899768expressed protein
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11535.1.S1_at--319--1491Chr01:28896460..28896484 (25 bp)
AGCAAGAGCGACCACCTGCTCAGGT
LOC_Os01g49720
OsAffx.11535.1.S1_at--833--6091Chr01:28896379..28896403 (25 bp)
GAGTCGCTCGTCGTCCTGGAGTACA
LOC_Os01g49720
OsAffx.11535.1.S1_at--194--4811Chr01:28896374..28896398 (25 bp)
GCTCGTCGTCCTGGAGTACATCGAC
LOC_Os01g49720
OsAffx.11535.1.S1_at--1007--8531Chr01:28896278..28896301 (24 bp)
TGGACCAACTACGTCAACGACACGT
LOC_Os01g49720
OsAffx.11535.1.S1_at--69--9711Chr01:28896187..28896288 (25 bp)
TCAACGACACGTTTTTCCCGTCGTG
LOC_Os01g49720
OsAffx.11535.1.S1_at--656--9311Chr01:28896172..28896196 (25 bp)
TCCCGTCGTGGAAAGTGCTGTTCAG
LOC_Os01g49720
OsAffx.11535.1.S1_at--88--3991Chr01:28896166..28896190 (25 bp)
CGTGGAAAGTGCTGTTCAGGTCGAC
LOC_Os01g49720
OsAffx.11535.1.S1_at--652--9431Chr01:28896007..28896031 (25 bp)
TCGGGAGCCATCTGGTGTGGATCAA
LOC_Os01g49720
OsAffx.11535.1.S1_at--429--9591Chr01:28895905..28895929 (25 bp)
TCTTGGCCGTCGACGCTGTCAGGCA
LOC_Os01g49720
OsAffx.11535.1.S1_at--1120--1811Chr01:28895869..28895893 (25 bp)
ACGCCGGCGATGTTCTGAAGCAGTA
LOC_Os01g49720
OsAffx.11535.1.S1_at--1113--4471Chr01:28895867..28895891 (25 bp)
GCCGGCGATGTTCTGAAGCAGTACA
LOC_Os01g49720
Target Sequence 
AGCAAGAGCGACCACCTGCTCAGGTCCAACCCGGTGCACGAGAAGGTCCCCGTCCTCATCCACGGCGGCCGGCCGGTGTG
CGAGTCGCTCGTCGTCCTGGAGTACATCGACGAGACCTGGGGAGCCACCGGGACGCCGCAGCTCCTCCCTGCCGATCCCT
ACGACCGCGCCACCGCGCGTTTCTGGACCAACTACGTCAACGACACGTTTTTCCCGTCGTGGAAAGTGCTGTTCAGGTCG
ACGGCGGCGGAGCAGAGAGCTGAGGCGTTCAAGAACGTCGTCCCTCGCGTGGAGGCGCTGGAGCGAGCGTTCGGGGAGTG
CTCCAAGGGGAAGGCCTTCTTCGGCGGGGACGACGCGGGGCTCGTCGACGTCGCGCTCGGGAGCCATCTGGTGTGGATCA
AGGTGGTGGACGAGGTGGCCGGCGCCAACCTGCTCGACGAGGCCAAGTTCCCGGGCTTGGCGGCGTGGGCGGAGCGGTTC
TTGGCCGTCGACGCTGTCAGGCAGGTGATGCCCGACGCCGGCGATGTTCTGAAGCAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis