Browse Element(s) Details


OsAffx.11553.1.S1_at

Description tigr:9629.m04938
TID=OsAffx.11553.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5099011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50940Os.46956.1.S1_at10/111+29598028..29600087Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g50950NANA1+29604334..29604654hypothetical protein
LOC_Os01g50960Os.32485.1.S1_at10/111+29606973..29609745Transcriptional Coactivator p15 family protein, expressed
LOC_Os01g50970Os.34111.1.S1_at11/111+29612261..29615542expressed protein
LOC_Os01g50980OsAffx.11850.2.S1_x_at11/111+29617173..29622289Cullin family protein
LOC_Os01g50990OsAffx.11553.1.S1_at11/111+29624888..29626311expressed protein
LOC_Os01g51000OsAffx.2296.1.S1_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51000OsAffx.2296.1.S1_x_at11/111+29628107..29629277hypothetical protein
LOC_Os01g51010Os.9113.3.S1_x_at11/111+29633295..29639372expressed protein
LOC_Os01g51010Os.9113.1.S1_a_at11/111+29633295..29639372expressed protein
LOC_Os01g51020Os.40148.1.S1_at11/111+29641030..29643757Ribosomal L28e protein family protein, expressed
LOC_Os01g51030NANA1+29644406..29644663hypothetical protein
LOC_Os01g51040Os.53457.1.S1_at11/111+29645042..29649406expressed protein
LOC_Os01g51050OsAffx.21558.1.S1_at11/111+29650067..29651187Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11553.1.S1_at--363--1091Chr01:29625565..29625589 (25 bp)
AGGGCGACACTTGCTGCAGATCGGC
LOC_Os01g50990
OsAffx.11553.1.S1_at--315--2771Chr01:29625692..29625716 (25 bp)
AAGAGCAACCCCAAGTACCATGGTT
LOC_Os01g50990
OsAffx.11553.1.S1_at--978--6971Chr01:29625706..29625730 (25 bp)
GTACCATGGTTCCAAGCGTGCGGAT
LOC_Os01g50990
OsAffx.11553.1.S1_at--1109--8511Chr01:29625745..29625769 (25 bp)
TGTACTTTGGTACCCTCAACGAAGC
LOC_Os01g50990
OsAffx.11553.1.S1_at--483--2671Chr01:29625766..29625790 (25 bp)
AAGCCCAGATGTTGTGCAGTTTCCT
LOC_Os01g50990
OsAffx.11553.1.S1_at--944--1111Chr01:29625793..29625817 (25 bp)
AGTGCTTTCCCAACGTCGAAACGCT
LOC_Os01g50990
OsAffx.11553.1.S1_at--421--5551Chr01:29625810..29625934 (25 bp)
GAAACGCTGCACCTCAAGTCTGACA
LOC_Os01g50990
OsAffx.11553.1.S1_at--1114--3851Chr01:29625938..29625962 (25 bp)
CTGACGAACTCAACAATGCCACTGG
LOC_Os01g50990
OsAffx.11553.1.S1_at--1024--1511Chr01:29626055..29626079 (25 bp)
AGCAGAGTGAGCTTGCCTTCATCAA
LOC_Os01g50990
OsAffx.11553.1.S1_at--1049--8251Chr01:29626176..29626200 (25 bp)
GGCTCTGGATTCTGTAAAACCTGCG
LOC_Os01g50990
OsAffx.11553.1.S1_at--111--1191Chr01:29626215..29626239 (25 bp)
AGTAGTGTACTCGACACATGCCCTT
LOC_Os01g50990
Target Sequence 
AGGGCGACACTTGCTGCAGATCGGCACCACCACCATCAAGGCTAGAACAAGAGCAACCCCAAGTACCATGGTTCCAAGCG
TGCGGATCTTAGCATTGAAGGTGTACTTTGGTACCCTCAACGAAGCCCAGATGTTGTGCAGTTTCCTCCAGTGCTTTCCC
AACGTCGAAACGCTGCACCTCAAGTCTGACAAAGCTGACGAACTCAACAATGCCACTGGGGAGCACAAGGCCATGTTCTG
GAAGGGAGCTGGTGAAATTGAATGTATCAAGTCACATGTTAAAAAGATGGTTTTCGATGAGTTCCAAGGGAAGCAGAGTG
AGCTTGCCTTCATCAAGTTTGTCATGGAGAGGGCGCAGGTGCTGCAAAAGATTGATATTATTTCCACCAATGCAAGTTGC
ACAACTTTGGAGAAGAATAAGCTGGTTTTGAAGGCTCTGGATTCTGTAAAACCTGCGAGTAAAAATTGTCAAGTAGTGTA
CTCGACACATGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis