Browse Element(s) Details


OsAffx.11598.1.S1_at

Description tigr:9629.m05287
TID=OsAffx.11598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5423011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54220OsAffx.22940.2.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_x_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.1.S1_s_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.5.S1_at11/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.3.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220Os.35344.18.S1_x_at10/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.3.S1_x_at9/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.22940.2.S1_at8/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54220OsAffx.31552.2.S1_at1/111+31514122..31521674transposon protein, putative, Mutator sub-class
LOC_Os01g54230OsAffx.11598.1.S1_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230OsAffx.11598.1.S1_x_at11/111+31524977..31525769hypothetical protein
LOC_Os01g54230Os.33406.1.A1_x_at1/111+31524977..31525769hypothetical protein
LOC_Os01g54240Os.34156.1.S1_a_at10/111+31530293..31538120Nup85 Nucleoporin family protein, expressed
LOC_Os01g54250OsAffx.20380.1.S1_x_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.20380.1.S1_at11/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22711.4.A1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54250OsAffx.22927.1.S1_x_at1/111+31540365..31543522retrotransposon protein, putative, unclassified
LOC_Os01g54260OsAffx.21171.3.S1_x_at1/111+31544522..31546033retrotransposon protein, putative, unclassified
LOC_Os01g54270OsAffx.9447.1.S1_x_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.9447.1.S1_at11/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.10731.1.A1_a_at2/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270OsAffx.20729.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed
LOC_Os01g54270Os.38764.1.S1_x_at1/111+31547169..31555414transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11598.1.S1_at--1162--8791Chr01:31525150..31525174 (25 bp)
TGTTGACCACCTGCCGATGGAGAGC
LOC_Os01g54230
OsAffx.11598.1.S1_at--423--8931Chr01:31525153..31525177 (25 bp)
TGACCACCTGCCGATGGAGAGCGAA
LOC_Os01g54230
OsAffx.11598.1.S1_at--1009--1851Chr01:31525184..31525208 (25 bp)
ACGACGGCGGCAGCCATTACGGCAA
LOC_Os01g54230
OsAffx.11598.1.S1_at--1002--1931Chr01:31525187..31525211 (25 bp)
ACGGCGGCAGCCATTACGGCAATGA
LOC_Os01g54230
OsAffx.11598.1.S1_at--949--8351Chr01:31525189..31525213 (25 bp)
GGCGGCAGCCATTACGGCAATGATG
LOC_Os01g54230
OsAffx.11598.1.S1_at--920--3931Chr01:31525191..31525215 (25 bp)
CGGCAGCCATTACGGCAATGATGAT
LOC_Os01g54230
OsAffx.11598.1.S1_at--541--4531Chr01:31525280..31525304 (25 bp)
GCCGCCATCTCGTGGGTGTTCGCGT
LOC_Os01g54230
OsAffx.11598.1.S1_at--704--4211Chr01:31525281..31525305 (25 bp)
CCGCCATCTCGTGGGTGTTCGCGTG
LOC_Os01g54230
OsAffx.11598.1.S1_at--984--3971Chr01:31525431..31525452 (22 bp)
CGGTGGACCTGATCGAGATGGTCGA
LOC_Os01g54230
OsAffx.11598.1.S1_at--607--1311Chr01:31525673..31525693 (21 bp)
AGATGGTCGAGGTCCTGCGCCACCA
LOC_Os01g54230
OsAffx.11598.1.S1_at--1038--8591Chr01:31525673..31525696 (24 bp)
TGGTCGAGGTCCTGCGCCACCACGA
LOC_Os01g54230
Target Sequence 
TGTTGACCACCTGCCGATGGAGAGCGAAGCCAGGACGACGGCGGCAGCCATTACGGCAATGATGATGGCGGCGACGGCGG
AGGAGGTGAGGGGCGATAGCCGCTGCCGCCAACAAGGGCCACCGCCGGCCGCCGCCATCTCGTGGGTGTTCGCGTGGACG
CAGACGCGACTGGTGCTCCCGGCGTGGCTCGGCGTCGGGCGCGGCCTGCAGGACGCCTGCGACAAGGGGCACACCGACGA
GCTCCGCGCCATGTACAAGGAGTGGCCCTTCTTCCAGTCCACGGTGGACCTGATCGAGATGGTCGAGGTCCTGCGCCACC
ACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis