Browse Element(s) Details


OsAffx.11610.2.S1_at

Description tigr:9629.m05386
TID=OsAffx.11610.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5518011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein
LOC_Os01g55170Os.50721.1.S1_at11/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55170Os.9803.1.S1_a_at10/111+32064904..32069629La domain containing protein, expressed
LOC_Os01g55180OsAffx.11610.2.S1_at11/111+32070709..32075429hypothetical protein
LOC_Os01g55190Os.8252.1.S1_s_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.8252.1.S1_at11/111+32076028..32080215expressed protein
LOC_Os01g55190Os.37713.1.S1_at1/111+32076028..32080215expressed protein
LOC_Os01g55200Os.33391.1.S1_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55200Os.33391.2.S1_x_at11/111+32088071..32090735Potassium channel KAT1, putative, expressed
LOC_Os01g55210OsAffx.23798.2.S1_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55210OsAffx.23798.1.S1_s_at11/111+32091409..32091951F-box domain containing protein
LOC_Os01g55220NANA1+32093478..32093690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11610.2.S1_at--956--8451Chr01:32072407..32072431 (25 bp)
TGGCCATCTTTGTCCATGCGTTGCA
LOC_Os01g55180
OsAffx.11610.2.S1_at--500--591Chr01:32072422..32072446 (25 bp)
ATGCGTTGCACATCGGTAGCGGCTA
LOC_Os01g55180
OsAffx.11610.2.S1_at--690--4851Chr01:32072443..32072467 (25 bp)
GCTACCAGGAATTTCTGCCGGCTAG
LOC_Os01g55180
OsAffx.11610.2.S1_at--219--9191Chr01:32072458..32072482 (25 bp)
TGCCGGCTAGCTTTGTCTTGTCTAT
LOC_Os01g55180
OsAffx.11610.2.S1_at--75--10811Chr01:32072475..32072499 (25 bp)
TTGTCTATCGCGCTTTCACGAATCA
LOC_Os01g55180
OsAffx.11610.2.S1_at--171--9671Chr01:32072497..32072521 (25 bp)
TCACGCCTGGGTTTTACCGTAACAG
LOC_Os01g55180
OsAffx.11610.2.S1_at--753--1791Chr01:32073960..32074118 (25 bp)
ACCCAAACATGGTCTCAACGTTGAT
LOC_Os01g55180
OsAffx.11610.2.S1_at--489--2591Chr01:32074111..32074134 (24 bp)
AACGTTGATGGTTTTGAGCCGCTCT
LOC_Os01g55180
OsAffx.11610.2.S1_at--611--7171Chr01:32074135..32074159 (25 bp)
GTCTGCAACCACCTACCTAAAGTGA
LOC_Os01g55180
OsAffx.11610.2.S1_at--554--311Chr01:32074164..32074188 (25 bp)
ATACGCGGGTACAATCTCACTTGAG
LOC_Os01g55180
OsAffx.11610.2.S1_at--769--7311Chr01:32074216..32074240 (25 bp)
GTGCTCCACAATCATATGTACCCAG
LOC_Os01g55180
Target Sequence 
TGGCCATCTTTGTCCATGCGTTGCACATCGGTAGCGGCTACCAGGAATTTCTGCCGGCTAGCTTTGTCTTGTCTATCGCG
CTTTCACGAATCACGCCTGGGTTTTACCGTAACAGTTTATTACGTCTATGGATCGGACTATTTTTTTTTGTCCGGATACT
AATTTTAATCCAGAAACTTAATGACCCAAACATGGTCTCAACGTTGATGGTTTTGAGCCGCTCTGTCTGCAACCACCTAC
CTAAAGTGAGAGCATACGCGGGTACAATCTCACTTGAGCCGTCGCCGAATTCCCTTCCGTTCATTGTGCTCCACAATCAT
ATGTACCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11610.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis