Browse Element(s) Details


OsAffx.11891.1.S1_at

Description tigr:9630.m00377
TID=OsAffx.11891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calciumproton exchanger
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0463011/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04580NANA2+2047914..2048255retrotransposon protein, putative, unclassified
LOC_Os02g04590OsAffx.11889.1.S1_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04590OsAffx.11889.1.S1_x_at10/112+2052178..2055331Auxin-independent growth promoter, putative
LOC_Os02g04600Os.9332.2.S1_x_at1/112+2059024..2060523transposon protein, putative, unclassified
LOC_Os02g04610Os.53281.1.S1_s_at11/112+2064263..2065735expressed protein
LOC_Os02g04610Os.53281.1.S1_at11/112+2064263..2065735expressed protein
LOC_Os02g04620OsAffx.2507.1.S1_at11/112+2065874..2066200hypothetical protein
LOC_Os02g04630OsAffx.11891.1.S1_at11/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04630Os.5811.1.S1_at1/112+2070492..2075369Sodium/calcium exchanger protein, expressed
LOC_Os02g04640Os.52219.1.A1_at11/112+2075496..2079149myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g04650OsAffx.24099.1.S1_x_at11/112+2082561..2085271expressed protein
LOC_Os02g04650Os.6162.1.S1_at11/112+2082561..2085271expressed protein
LOC_Os02g04660Os.17772.1.S1_at10/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04660OsAffx.4369.1.S1_at1/112+2087121..2093051Protein arginine N-methyltransferase 5, putative, expressed
LOC_Os02g04670Os.5742.1.S2_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.5742.1.S1_a_at11/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed
LOC_Os02g04670Os.56065.1.S1_s_at1/112+2096519..2101451Glucan endo-1,3-beta-glucosidase 6 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030001biological_processmetal ion transport
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0012505cellular_componentendomembrane system
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11891.1.S1_at--10--4791Chr02:2073975..2073999 (25 bp)
GCTGCGCTGCATTATACTCATTCAG
LOC_Os02g04630
OsAffx.11891.1.S1_at--1121--1431Chr02:2073998..2074022 (25 bp)
AGAAGCTCAATTCGGCAAGTCAGAA
LOC_Os02g04630
OsAffx.11891.1.S1_at--119--2031Chr02:2074022..2074046 (25 bp)
ACTAGCGTTGTCGAGGTTCAGCAGC
LOC_Os02g04630
OsAffx.11891.1.S1_at--994--1591Chr02:2074044..2074068 (25 bp)
AGCTGCATTATGCTCGTTGCTTATG
LOC_Os02g04630
OsAffx.11891.1.S1_at--941--10711Chr02:2074060..2074084 (25 bp)
TTGCTTATGCATCCTACCTTTACTT
LOC_Os02g04630
OsAffx.11891.1.S1_at--835--6631Chr02:2074088..2074112 (25 bp)
GTTGTCAAACAATCGGCGTCGCAAT
LOC_Os02g04630
OsAffx.11891.1.S1_at--635--5491Chr02:2074576..2074600 (25 bp)
GAACATACCAGTTGCATTCATCAGT
LOC_Os02g04630
OsAffx.11891.1.S1_at--202--131Chr02:2074591..2074615 (25 bp)
ATTCATCAGTGTTGTTTTGCTCCCA
LOC_Os02g04630
OsAffx.11891.1.S1_at--879--2391Chr02:2074970..2074994 (25 bp)
AAACTTCCATCTCTTTGAGACGGCA
LOC_Os02g04630
OsAffx.11891.1.S1_at--516--1371Chr02:2074987..2075011 (25 bp)
AGACGGCAAGCCTCTTAACAACTGT
LOC_Os02g04630
OsAffx.11891.1.S1_at--1146--6331Chr02:2075163..2075187 (25 bp)
GATGCTATTTCTCTGTTATCTGATA
LOC_Os02g04630
Target Sequence 
GCTGCGCTGCATTATACTCATTCAGAAGCTCAATTCGGCAAGTCAGAACTAGCGTTGTCGAGGTTCAGCAGCTGCATTAT
GCTCGTTGCTTATGCATCCTACCTTTACTTTCAGTTGTCAAACAATCGGCGTCGCAATGAAGCTAATGTGGGGGCTTCCA
AAGCTTGGAACATACCAGTTGCATTCATCAGTGTTGTTTTGCTCCCAGTGGTGGGGAATTCAGCAGGACATGCTAATGCT
GTCATGTTTGCAGTGAAAGACAAATTAGACATTTCTCTTGGAGTGGCAATAGGATCATCGATACAGATATCCATGTTTGG
GATACCATTTTGTGTAGTGATGGGATGGATGATGGGCAAGCCAATGGACCTAAACTTCCATCTCTTTGAGACGGCAAGCC
TCTTAACAACTGTACTGGTTGTTGCATTTTTGTTGCAGGATGGGACTTCAAATTGTGTGAAAGGATTGATGCTATTTCTC
TGTTATCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis