Browse Element(s) Details


OsAffx.11949.1.S1_at

Description tigr:9630.m00834
TID=OsAffx.11949.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1535011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g0921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15290Os.26886.1.S1_x_at6/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15290Os.26886.3.S1_x_at2/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15300Os.26886.1.S1_x_at2/117+8822926..8824767hypothetical protein
LOC_Os07g15300OsAffx.26148.1.S1_x_at1/117+8822926..8824767hypothetical protein
LOC_Os07g15310OsAffx.16467.1.S1_at9/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.6.S1_s_at7/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.2.S1_s_at6/117+8825043..8825682hypothetical protein
LOC_Os07g15320Os.36470.1.S1_at11/117+8827244..8829268expressed protein
LOC_Os07g15330OsAffx.16280.1.S1_at8/117+8829639..8832338hypothetical protein
LOC_Os07g15330OsAffx.8723.1.S1_at2/117+8829639..8832338hypothetical protein
LOC_Os07g15340Os.20614.3.S1_x_at11/117+8839730..8842423hAT family dimerisation domain containing protein
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15360OsAffx.28457.1.S1_at11/117+8859988..8862602hypothetical protein
LOC_Os07g15360OsAffx.10096.1.S1_x_at2/117+8859988..8862602hypothetical protein
LOC_Os07g15370Os.9420.1.S1_at11/117+8869889..8877210Metal transporter Nramp1, putative, expressed
LOC_Os07g15380OsAffx.28458.1.S1_at11/117+8881477..8881935NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11949.1.S1_at--58--1493Chr02:4730114..4730138 (25 bp)
AGCAACACGGCGGAAATCGACGGAG
LOC_Os02g09210
OsAffx.11949.1.S1_at--575--2473Chr02:4730117..4730141 (25 bp)
AACACGGCGGAAATCGACGGAGCTA
LOC_Os02g09210
OsAffx.11949.1.S1_at--284--8153Chr02:4730125..4730149 (25 bp)
GGAAATCGACGGAGCTAGCGCTGCC
LOC_Os02g09210
OsAffx.11949.1.S1_at--362--3053Chr02:4730128..4730152 (25 bp)
AATCGACGGAGCTAGCGCTGCCCAG
LOC_Os02g09210
OsAffx.11949.1.S1_at--243--8073Chr02:4730135..4730159 (25 bp)
GGAGCTAGCGCTGCCCAGATTGATC
LOC_Os02g09210
OsAffx.11949.1.S1_at--453--4853Chr02:4730138..4730162 (25 bp)
GCTAGCGCTGCCCAGATTGATCGCG
LOC_Os02g09210
OsAffx.11949.1.S1_at--1057--1992Chr02:4730193..4730217 (25 bp)
ACTCGAGGTCAAACTTCGCTGACGA
LOC_Os02g09210
OsAffx.11949.1.S1_at--445--7832Chr02:4730199..4730223 (25 bp)
GGTCAAACTTCGCTGACGATGCCAT
LOC_Os02g09210
OsAffx.11949.1.S1_at--949--2393Chr02:4730203..4730227 (25 bp)
AAACTTCGCTGACGATGCCATGAAA
LOC_Os02g09210
OsAffx.11949.1.S1_at--464--10633Chr02:4730207..4730231 (25 bp)
TTCGCTGACGATGCCATGAAAGACC
LOC_Os02g09210
OsAffx.11949.1.S1_at--401--6732Chr02:4730256..4730280 (25 bp)
GTTCAGATGATGAGAATCTTGAAGA
LOC_Os02g09210
Target Sequence 
AGCAACACGGCGGAAATCGACGGAGCTAGCGCTGCCCAGATTGATCGCGNGGCAGAGGTGCGNGGGNTGATCGNTCATNA
CTCGAGGTCAAACTTCGCTGACGATGCCATGAAAGACCNAAGCCANTGCACATCATCNGNNNNGTTCAGTTCAGATGATG
AGAATCTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis