Browse Element(s) Details


OsAffx.12095.1.S1_at

Description tigr:9630.m01706
TID=OsAffx.12095.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g181107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18070OsAffx.2660.1.S1_at11/112+10490444..10496411NB-ARC domain containing protein, expressed
LOC_Os02g18080OsAffx.24300.1.S1_at11/112+10504701..10508396NB-ARC domain containing protein, expressed
LOC_Os02g18090Os.37452.1.S1_at11/112+10509167..10512212expressed protein
LOC_Os02g18100OsAffx.2661.1.S1_at11/112+10514511..10514915hypothetical protein
LOC_Os02g18110OsAffx.12095.1.S1_at7/112+10519498..10524540hypothetical protein
LOC_Os02g18110OsAffx.15378.1.S1_at1/112+10519498..10524540hypothetical protein
LOC_Os02g18120OsAffx.30226.4.S1_x_at3/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18120OsAffx.24587.1.S1_x_at2/112+10529626..10532251retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18130OsAffx.24301.1.S1_at11/112+10532591..10533117hypothetical protein
LOC_Os02g18140OsAffx.12096.1.S1_at10/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18140Os.7328.1.S1_at1/112+10535633..10539697NB-ARC domain containing protein, expressed
LOC_Os02g18150Os.52982.1.S1_at11/112+10540686..10543153expressed protein
LOC_Os02g18160OsAffx.2662.1.S1_at11/112+10545839..10546509hypothetical protein
LOC_Os02g18160OsAffx.31859.1.S1_at1/112+10545839..10546509hypothetical protein
LOC_Os02g18170OsAffx.2663.1.S1_at11/112+10548893..10550861hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12095.1.S1_at--458--1432Chr02:10519220..10519244 (25 bp)
AGAACAGACTTACATTGCAGCCTCT
NONE
OsAffx.12095.1.S1_at--515--2052Chr02:10519227..10519251 (25 bp)
ACTTACATTGCAGCCTCTGTGCTAA
NONE
OsAffx.12095.1.S1_at--104--9473Chr02:10519242..10519261 (20 bp)
TCTGTGCTAATGGTCGGCTGTGTAA
NONE
OsAffx.12095.1.S1_at--446--9451NONE
TCGGCTGTGTAATTTCGAAGGGATC
NONE
OsAffx.12095.1.S1_at--820--2451Chr02:10520671..10520695 (25 bp)
AACAAGGCCTCTATGATGATGGTGG
LOC_Os02g18110
OsAffx.12095.1.S1_at--465--1631Chr02:10520703..10520727 (25 bp)
AGCGGTAGCGGATTCAGTCCCTCTG
LOC_Os02g18110
OsAffx.12095.1.S1_at--713--9071Chr02:10520792..10520816 (25 bp)
TGCTTCGGAGCCATCAGCCATGGTA
LOC_Os02g18110
OsAffx.12095.1.S1_at--811--3551Chr02:10520803..10520823 (21 bp)
CATCAGCCATGGTACCGAGGTTAAG
LOC_Os02g18110
OsAffx.12095.1.S1_at--91--3512Chr11:8271957..8271977 (21 bp)
CATGGTGACCATGAGCTGTTTGCTT
NONE
OsAffx.12095.1.S1_at--1007--3513Chr11:8271962..8271986 (25 bp)
CATGAGCTGTTTGCTTGGCTTTCAG
NONE
OsAffx.12095.1.S1_at--69--8311Chr02:10522793..10522817 (25 bp)
GGCTTTCAGCTTCAGAACTCAAAAG
LOC_Os02g18110
Target Sequence 
AGAACAGACTTACATTGCAGCCTCTGTGCTAATGGTCGGCTGTGTAATTTCGAAGGGATCTAAACAAGGCCTCTATGATG
ATGGTGGCGGCGACAGCGGTAGCGGATTCAGTCCCTCTGCTGCCGAGCACAAGCGACACGAGCAGATTGGCAACCTCGCC
GTCGAGCTCAAGCACCCGCGCCTTGCTTCGGAGCCATCAGCCATGGTACCGAGGTTAAGGTTAAGGTGCCCTCAGGCCTC
ATGGACACACCAGAGGACCAATAACATGGTGACCATGAGCTGTTTGCTTGGCTTTCAGCTTCAGAACTCAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis