Browse Element(s) Details


OsAffx.12263.1.S1_at

Description tigr:9630.m02768
TID=OsAffx.12263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=germin E protein precursor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2902011/11Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os12g058801/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28970OsAffx.24487.1.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.2.S1_s_at11/112+17144695..17147945expressed protein
LOC_Os02g28970OsAffx.24487.1.S1_at10/112+17144695..17147945expressed protein
LOC_Os02g28980Os.8010.1.S1_at10/112+17150595..1715502570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os02g28990OsAffx.12260.1.S1_at11/112+17157937..17158661hypothetical protein
LOC_Os02g29000OsAffx.12261.1.S1_at11/112+17159318..17160127Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29010OsAffx.12262.1.S1_at10/112+17161547..17166870Cupin family protein
LOC_Os02g29020OsAffx.12263.1.S1_at11/112+17169352..17170023Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12263.1.S1_at--718--9231Chr02:17169452..17169476 (25 bp)
TCCAGGATCTGTGCGTCGCGGACAA
LOC_Os02g29020
OsAffx.12263.1.S1_at--149--4031Chr02:17169492..17169516 (25 bp)
CGTCAATGGCGTCGCTTGCAAGGAC
LOC_Os02g29020
OsAffx.12263.1.S1_at--412--6051Chr02:17169715..17169739 (25 bp)
GAGATACTCACCGTGCTTGAGGGCT
LOC_Os02g29020
OsAffx.12263.1.S1_at--620--6132Chr02:17169733..17169757 (25 bp)
GAGGGCTCACTCTATGTTGGGTTCG
LOC_Os02g29020
OsAffx.12263.1.S1_at--723--6691Chr02:17169753..17169777 (25 bp)
GTTCGTGACATCCAACCCCGAGAAT
LOC_Os02g29020
OsAffx.12263.1.S1_at--1074--6751Chr02:17169846..17169870 (25 bp)
GTTCAACTATGGGACAACTGATGCG
LOC_Os02g29020
OsAffx.12263.1.S1_at--87--2571Chr02:17169861..17169885 (25 bp)
AACTGATGCGGTTGCTATCGTCGCA
LOC_Os02g29020
OsAffx.12263.1.S1_at--1151--9071Chr02:17169873..17169897 (25 bp)
TGCTATCGTCGCACTGAGTAGCCAA
LOC_Os02g29020
OsAffx.12263.1.S1_at--731--7711Chr02:17169905..17169929 (25 bp)
GGGTGATCACTGTAGCCAATGCGGT
LOC_Os02g29020
OsAffx.12263.1.S1_at--674--4431Chr02:17169942..17169966 (25 bp)
GCCATCCATCACAGATGATATCCTT
LOC_Os02g29020
OsAffx.12263.1.S1_at--490--10031Chr02:17169960..17169984 (25 bp)
TATCCTTGCAAAGGCCTTTCAAGTA
LOC_Os02g29020
Target Sequence 
TCCAGGATCTGTGCGTCGCGGACAAGGCGTCCACGGTGCGCGTCAATGGCGTCGCTTGCAAGGACGGCGAGGACGTCGCC
GCCGAGGACTTCTTCTTCTCCGGCCTCCACATGGCCGGAAACACCACCAACAAGCAGGGCTCCGCCGTCACGGCGGTCAA
CGTCGCGCAGGTCCCCGGCCTCAACACCCTCGGCATCTCCCTCGCTCGCATCGACTATGCGCTGCATGGTCTCAACCCTC
CTCACACGCATCCCCGTGCCACCGAGATACTCACCGTGCTTGAGGGCTCACTCTATGTTGGGTTCGTGACATCCAACCCC
GAGAATAAGCTGTTCACCAAGGTTATCAATAAGGGGGATGTGTTTGTTTTTCCTAAGGGGCTTGTCCACTTCCAGTTCAA
CTATGGGACAACTGATGCGGTTGCTATCGTCGCACTGAGTAGCCAAAACCCTGGGGTGATCACTGTAGCCAATGCGGTGT
TTGGATCAAAGCCATCCATCACAGATGATATCCTTGCAAAGGCCTTTCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis