Browse Element(s) Details


OsAffx.12287.1.S1_s_at

Description tigr:9630.m02902
TID=OsAffx.12287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0113011/11expressed protein
LOC_Os02g3033011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01090OsAffx.24047.1.S1_at11/112+48497..48880Zinc finger, C2H2 type family protein
LOC_Os02g01100Os.18993.2.S1_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01100Os.18993.2.S1_x_at5/112+50576..56192amino acid transporter family protein, putative, expressed
LOC_Os02g01110Os.24513.1.A1_at11/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01110Os.50431.1.S1_at1/112+59323..64708Translation initiation factor IF-3, N-terminal domain containing protein, expressed
LOC_Os02g01120OsAffx.11855.1.S1_at11/112+66677..66953hypothetical protein
LOC_Os02g01130OsAffx.12287.1.S1_s_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_x_at11/112+73183..73864expressed protein
LOC_Os02g01130Os.54560.1.S1_at11/112+73183..73864expressed protein
LOC_Os02g01140Os.7218.2.S1_at11/112+78174..79540GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01150Os.7218.1.S1_at11/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01150Os.7218.1.S2_at9/112+78483..82952D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os02g01160OsAffx.6724.2.S1_s_at1/112+85332..85637SKP1-like protein 1B, putative
LOC_Os02g01170OsAffx.11856.1.S1_x_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S1_s_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170Os.28066.1.S2_at11/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01170OsAffx.11856.1.S1_at9/112+86700..90020HECT-domain family protein, expressed
LOC_Os02g01180Os.23925.1.S1_at10/112+98001..107839Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12287.1.S1_s_at--914--4792Chr02:18063679..18063703 (25 bp)
GCTCGACGGCCGGTGCTTTCTCTGA
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--1047--1932Chr02:18063684..18063708 (25 bp)
ACGGCCGGTGCTTTCTCTGAGCTAA
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--681--4252Chr02:18063688..18063712 (25 bp)
CCGGTGCTTTCTCTGAGCTAAGCCA
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--868--7712Chr02:18064072..18064096 (25 bp)
GGGTGTGTATGCTACTGAATTTTGC
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--854--6913Chr09:11907228..11907248 (21 bp)
GTATGCTACTGAATTTTGCAGTCCT
NONE
OsAffx.12287.1.S1_s_at--456--4853Chr09:11907229..11907248 (20 bp)
GCTACTGAATTTTGCAGTCCTACCA
NONE
OsAffx.12287.1.S1_s_at--357--9012Chr02:18064087..18064111 (25 bp)
TGAATTTTGCAGTCCTACCAGTTAT
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--30--3132Chr02:18064089..18064113 (25 bp)
AATTTTGCAGTCCTACCAGTTATTG
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--1139--10252Chr02:18064092..18064116 (25 bp)
TTTGCAGTCCTACCAGTTATTGGAA
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--860--5012Chr02:18064095..18064119 (25 bp)
GCAGTCCTACCAGTTATTGGAATTT
LOC_Os02g30330
OsAffx.12287.1.S1_s_at--246--9972Chr02:18064102..18064126 (25 bp)
TACCAGTTATTGGAATTTTACTGCG
LOC_Os02g30330
Target Sequence 
GCTCGACGGCCGGTGCTTTCTCTGAGCTAAGCCAAATCGAGTGCCAAGTCCAAGAAAGGCACGAGAGGAGGAGGAGGAGG
AGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAGCAGTCAGGGCACGGGGATCAGTGGCACGCCAATGTGGGCAGCTTCTTCTTCTTCTTCGATGCAGC
ATCTGTTCCTGCTCTGCCGCCTCCTGGGGTTCTGCTTTGTGTTCACGGCGAGCCAGCAGCAGCAGTCGGACTCGTGCAGC
AGCGCCGGCGTCGCGGTCGCGCATCTCGCCTTCCGCTGCCTGACCGTCTGGAAGCAGGAGGACTTCGTCCTTCGGGTGTG
TATGCTACTGAATTTTGCAGTCCTACCAGTTATTGGAATTTTACTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12287.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis