Browse Element(s) Details


OsAffx.12427.1.S1_at

Description tigr:9630.m03892
TID=OsAffx.12427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Piwi domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4028011/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40250Os.10263.1.S1_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.10222.1.S1_x_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.22442.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.6693.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.45902.1.A1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.51841.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.11828.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40260Os.4614.1.S1_a_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40260Os.4614.2.S1_x_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40270OsAffx.12426.1.S1_at11/112+24375022..24376804hypothetical protein
LOC_Os02g40280OsAffx.12427.1.S1_at11/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.2925.1.S1_at10/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40280OsAffx.10566.1.S1_at1/112+24384732..24390515Piwi domain containing protein, expressed
LOC_Os02g40300NANA2+24391662..24392900retrotransposon protein, putative, unclassified
LOC_Os02g40310Os.49896.1.S1_at1/112+24394454..24397332retrotransposon protein, putative, unclassified, expressed
LOC_Os02g40320OsAffx.12428.1.S1_at10/112+24397660..24403443PAZ domain containing protein, expressed
LOC_Os02g40330Os.1433.3.S1_x_at11/112+24403448..24408215expressed protein
LOC_Os02g40330Os.1433.2.S1_at11/112+24403448..24408215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12427.1.S1_at--782--5851Chr02:24390162..24390186 (25 bp)
GACCAAGCTTGGACTGGTTTCTCAG
LOC_Os02g40280
OsAffx.12427.1.S1_at--383--7871Chr02:24390147..24390171 (25 bp)
GGTTTCTCAGTGCTGCTTACCAAAG
LOC_Os02g40280
OsAffx.12427.1.S1_at--494--11Chr02:24390096..24390120 (25 bp)
ATACCTCGAGAATATTGCCCTTAAG
LOC_Os02g40280
OsAffx.12427.1.S1_at--305--751Chr02:24389867..24389891 (25 bp)
ATGTACTCGTCATCTATTGCAGGAG
LOC_Os02g40280
OsAffx.12427.1.S1_at--146--5731Chr02:24389623..24389647 (25 bp)
GACTGGCCAGAAGTCACCACATATA
LOC_Os02g40280
OsAffx.12427.1.S1_at--719--6151Chr02:24389558..24389582 (25 bp)
GAGGTCTATTTCATTCTACTCGAGA
LOC_Os02g40280
OsAffx.12427.1.S1_at--375--5571Chr02:24389252..24389276 (25 bp)
GAAAGTCAATTCAGCCAGGTTATCA
LOC_Os02g40280
OsAffx.12427.1.S1_at--464--5291Chr02:24389128..24389151 (24 bp)
GAAGGCATGCCTCTCTCTACAAGAG
LOC_Os02g40280
OsAffx.12427.1.S1_at--535--1331Chr02:24389107..24389131 (25 bp)
AGAGGATTATCTGCCACCAATCACA
LOC_Os02g40280
OsAffx.12427.1.S1_at--909--2931Chr02:24389065..24389089 (25 bp)
AAGGCATCACACCAGGATTTTCCCT
LOC_Os02g40280
OsAffx.12427.1.S1_at--827--10371Chr02:24389048..24389072 (25 bp)
TTTTCCCTCACACACTTTGCAGTAA
LOC_Os02g40280
Target Sequence 
GACCAAGCTTGGACTGGTTTCTCAGTGCTGCTTACCAAAGAATGTTAAAACAGATACAAATATAAAATACCTCGAGAATA
TTGCCCTTAAGATAAATGTCAAGACATACCGACAATCATTTTTGGTGCTGATGTTAGCCATCCCCCACCAGGGATGTACT
CGTCATCTATTGCAGGAGTGGTTGGATCAATCGACTGGCCAGAAGTCACCACATATAGAGCTAATCTCTGCCCAACTTGA
AAGGCAGGAGATTATAGGAGGTCTATTTCATTCTACTCGAGATCCAAAAGGGTGCCTTAAACCTGATGGCATGATCAGGG
AACTGATGATGAACTTCTACCAGAGGAATAGGCGTAAGCCTGAAAGGATAATCTTTTACAGAGATGGAATAAGCGAAAGT
CAATTCAGCCAGGTTATCATTCATGAAGTAGATGCCATCAGGAAGGCATGCCTCTCTCTACAAGAGGATTATCTGCCACC
AATCACATTAGTGATTGTCCAGAAAAGGCATCACACCAGGATTTTCCCTCACACACTTTGCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis