Browse Element(s) Details


OsAffx.12558.1.S1_at

Description tigr:9630.m04800
TID=OsAffx.12558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g491309/11expressed protein
LOC_Os12g330601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49090Os.26580.1.A1_at10/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090OsAffx.23696.1.S1_x_at1/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49110OsAffx.5954.4.S1_x_at7/112+30026085..30027236hypothetical protein
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12558.1.S1_at--752--9011NONE
TGAATTGCACCTGACTAATAGCCTG
NONE
OsAffx.12558.1.S1_at--147--6991Chr02:30040674..30040698 (25 bp)
GTACCTGCTCTTATATCTGTCAATC
LOC_Os02g49130
OsAffx.12558.1.S1_at--530--4271Chr02:30040671..30040695 (25 bp)
CCTGCTCTTATATCTGTCAATCCAT
LOC_Os02g49130
OsAffx.12558.1.S1_at--907--8731Chr02:30040657..30040681 (25 bp)
TGTCAATCCATAACTCTAAGAGCAG
LOC_Os02g49130
OsAffx.12558.1.S1_at--810--10731Chr02:30040410..30040430 (21 bp)
TTGAACTTGTTCTAAGAGGAGGTAG
LOC_Os02g49130
OsAffx.12558.1.S1_at--364--1011Chr02:30040128..30040151 (24 bp)
AGGTAGGGTTACTGCCACCGCACGG
LOC_Os02g49130
OsAffx.12558.1.S1_at--1102--9791Chr02:30040119..30040143 (25 bp)
TACTGCCACCGCACGGTTTAACGGT
LOC_Os02g49130
OsAffx.12558.1.S1_at--279--9874Chr12:19955743..19955767 (24 bp)
TACCGCGGTAATCACGCGGTTACCG
LOC_Os12g33060
OsAffx.12558.1.S1_at--386--4671NONE
GCGGTTACCGTGAGGATTAAGCTTT
NONE
OsAffx.12558.1.S1_at--181--10551Chr02:30038629..30038653 (25 bp)
TTCATCTGCGTTGCTTTGATCTTAA
LOC_Os02g49130
OsAffx.12558.1.S1_at--118--10771Chr02:30038614..30038638 (25 bp)
TTGATCTTAATATCTCTTGTCCTAG
LOC_Os02g49130
Target Sequence 
TGAATTGCACCTGACTAATAGCCTGCTATTGTACCTGCTCTTATATCTGTCAATCCATAACTCTAAGAGCAGATTGGCTA
TAGATGAATTGGAGCCAGTAGTTGGCTATACTATTGAACTTGTTCTAAGAGGAGGTAGGGTTACTGCCACCGCACGGTTT
AACGGTTACCGCGGTAATCACGCGGTTACCGTGAGGATTAAGCTTTCTATCGATAGTGGATTGGTCAGAATCTGTCAACA
TCAGCCTGATCACATTCAGGTTGTTGAGGGTGATGCTACCATGGAAAGGGTGGACGATGACGAAGACGGAATGGCTGCTC
GAGAGTCAATCTTTTTTACAGGATGGAATCAAAATTCAGTTCCAGGCGGCGTCTTGAACATCTTCATCTGCGTTGCTTTG
ATCTTAATATCTCTTGTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis