Browse Element(s) Details


OsAffx.12609.1.S1_at

Description tigr:9630.m05156
TID=OsAffx.12609.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12609.1.S1_at--804--8771Chr02:32040505..32040529 (25 bp)
TGTTTGCTGCTTTCTGGGAGAGCTG
LOC_Os02g52350
OsAffx.12609.1.S1_at--91--8211Chr02:32040480..32040504 (25 bp)
GGAAGTGGGCCATGTTTGTCAGCTT
LOC_Os02g52350
OsAffx.12609.1.S1_at--441--4431Chr02:32040472..32040496 (25 bp)
GCCATGTTTGTCAGCTTATGAGAAT
LOC_Os02g52350
OsAffx.12609.1.S1_at--790--6851Chr02:32040467..32040491 (25 bp)
GTTTGTCAGCTTATGAGAATTGAGA
LOC_Os02g52350
OsAffx.12609.1.S1_at--585--2731Chr02:32040431..32040455 (25 bp)
AAGAACTGTTCAAGATCCACTATCA
LOC_Os02g52350
OsAffx.12609.1.S1_at--503--8791Chr02:32040425..32040449 (25 bp)
TGTTCAAGATCCACTATCACACCAC
LOC_Os02g52350
OsAffx.12609.1.S1_at--885--2031Chr02:32040413..32040437 (25 bp)
ACTATCACACCACCTCAGTTTTTAA
LOC_Os02g52350
OsAffx.12609.1.S1_at--235--3311Chr02:32040408..32040432 (25 bp)
CACACCACCTCAGTTTTTAAGCATG
LOC_Os02g52350
OsAffx.12609.1.S1_at--602--1751Chr02:32040402..32040426 (25 bp)
ACCTCAGTTTTTAAGCATGCGTCAG
LOC_Os02g52350
OsAffx.12609.1.S1_at--1033--10491Chr02:32040392..32040416 (25 bp)
TTAAGCATGCGTCAGATTGAGTCGA
LOC_Os02g52350
OsAffx.12609.1.S1_at--277--9151Chr02:32040385..32040409 (25 bp)
TGCGTCAGATTGAGTCGAGGTGTTT
LOC_Os02g52350
Target Sequence 
TGTTTGCTGCTTTCTGGGAGAGCTGGGAAGTGGGCCATGTTTGTCAGCTTATGAGAATTGAGAATAGAGTGAAGAAGAAC
TGTTCAAGATCCACTATCACACCACCTCAGTTTTTAAGCATGCGTCAGATTGAGTCGAGGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis