Browse Element(s) Details


OsAffx.12714.1.S1_x_at

Description tigr:9631.m00179
TID=OsAffx.12714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GMC oxidoreductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0270011/11GMC oxidoreductase family protein
LOC_Os10g380502/11HOTHEAD protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed
LOC_Os03g02740Os.34954.1.S1_at11/113+1005935..1009991Phospholipase D beta 1, putative, expressed
LOC_Os03g02750Os.9533.1.S1_at11/113+1012328..1015016Subtilisin N-terminal Region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12714.1.S1_x_at--916--9291Chr03:988219..988243 (25 bp)
TCCGCGGCGGGTTCATCCTGGAGAA
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--937--8412Chr10:20049127..20049146 (20 bp)
GGCCGTGACGTTCAACTACTTCCGG
LOC_Os10g38050
OsAffx.12714.1.S1_x_at--201--7311Chr03:988352..988376 (25 bp)
GTGCGTGCGCGGCATCGAGACGATC
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--86--4231Chr03:988512..988536 (25 bp)
CCGCTGCAGCAGTATTGCAGGGAGA
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--1097--10211Chr03:988524..988548 (25 bp)
TATTGCAGGGAGACGGTGATGACCA
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--634--8051Chr03:988532..988556 (25 bp)
GGAGACGGTGATGACCATCTGGCAC
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--174--8871Chr03:988540..988564 (25 bp)
TGATGACCATCTGGCACTACCACGG
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--715--9431Chr03:988576..988600 (25 bp)
TCGGCGCCGTCGTGGACCAGGACTA
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--768--9391Chr03:988585..988609 (25 bp)
TCGTGGACCAGGACTACCGGGTGCT
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--722--9391Chr03:988630..988654 (25 bp)
TCGTCGACAGCTCAACCTTCAAGTA
LOC_Os03g02700
OsAffx.12714.1.S1_x_at--69--892Chr10:20049482..20049506 (25 bp)
AGGCCACCGTCATGATGCTCGGCAG
LOC_Os10g38050
Target Sequence 
TCCGCGGCGGGTTCATCCTGGAGAAGATCCTGGGGCCCATGTCGACGGGGCACGTCGCGCTCCGATCAGCCGACCCCGAC
GCGAACCCGGCCGTGACGTTCAACTACTTCCGGGACCCGCGCGACGTGGAGCGGTGCGTGCGCGGCATCGAGACGATCGA
GCGGGTGGTGCGGTCGCGGGCCTTCGCGCGGTTCACCTACGCCAACGTCACCGCCATGGAGGCCGCCGTGCTTGGCCGCC
GCGCCGGCCACCTCCCCGTCAACCTGCTGCCTCGCCGCGCCACCGACACGCGGCCGCTGCAGCAGTATTGCAGGGAGACG
GTGATGACCATCTGGCACTACCACGGCGGCTGCCATGTCGGCGCCGTCGTGGACCAGGACTACCGGGTGCTCGGCGTACG
TGGCCTCCGCGTCGTCGACAGCTCAACCTTCAAGTACTCGCCCGGCACCAACCCGCAGGCCACCGTCATGATGCTCGGCA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12714.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis