Browse Element(s) Details


OsAffx.12746.1.S1_at

Description tigr:9631.m00521
TID=OsAffx.12746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S4, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g389492/1140S ribosomal protein S9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12746.1.S1_at--39--7551NONE
GTGGCGGTGACGTAAACAGCAATGA
NONE
OsAffx.12746.1.S1_at--251--5771Chr03:2968712..2968733 (22 bp)
GACGTAAACAGCAATGATTCATTCA
NONE
OsAffx.12746.1.S1_at--352--6572Chr11:22681963..22681987 (25 bp)
GATTCATTCACTATGCATCCTGGGA
LOC_Os11g38949
OsAffx.12746.1.S1_at--741--9672Chr11:22681970..22681994 (25 bp)
TCACTATGCATCCTGGGAAGAAAAG
LOC_Os11g38949
OsAffx.12746.1.S1_at--1158--1611Chr03:2968768..2968792 (25 bp)
AGCGGCCATGGGACCAGTGTCCACG
NONE
OsAffx.12746.1.S1_at--480--7631Chr03:2968777..2968801 (25 bp)
GGGACCAGTGTCCACGGAGCAAACT
NONE
OsAffx.12746.1.S1_at--862--8051Chr03:2968792..2968816 (25 bp)
GGAGCAAACTCTGGACGCTGCATTC
NONE
OsAffx.12746.1.S1_at--973--8531Chr03:2968803..2968827 (25 bp)
TGGACGCTGCATTCGGGCGTCACGC
NONE
OsAffx.12746.1.S1_at--93--7112Chr03:2968821..2968845 (25 bp)
GTCACGCCGGTGTTGGCTATGCTGC
NONE
OsAffx.12746.1.S1_at--919--9111Chr03:2968843..2968867 (25 bp)
TGCTGCTACCCGTTCGCTGGAGGGA
NONE
OsAffx.12746.1.S1_at--649--4631Chr03:2968926..2968950 (25 bp)
GCGTTCGCGGGTTCGGCAGTGACGA
NONE
Target Sequence 
GTGGCGGTGACGTAAACAGCAATGATTCATTCACTATGCATCCTGGGAAGAAAAGAAAAGAGGAGGCAGCGGCCATGGGA
CCAGTGTCCACGGAGCAAACTCTGGACGCTGCATTCGGGCGTCACGCCGGTGTTGGCTATGCTGCTGCTACCCGTTCGCT
GGAGGGACGAGACGAGCTGCCTCGACGACCCACCGAGCCGGAGCCCAAGGAGGAGGCTCCCCTGCGCGTTCGCGGGTTCG
GCAGTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis