Browse Element(s) Details


OsAffx.12765.1.S1_x_at

Description tigr:9631.m00676
TID=OsAffx.12765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0745011/11DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07410Os.52495.1.S1_at11/113+3739635..3741424NA
LOC_Os03g07410Os.37090.1.S1_x_at10/113+3739635..3741424NA
LOC_Os03g07410Os.38268.2.S1_s_at1/113+3739635..3741424NA
LOC_Os03g07420Os.6131.1.S1_at11/113+3742938..3746341predicted 3-dehydroquinate synthase family protein, expressed
LOC_Os03g07430Os.9257.1.S1_at11/113+3746799..3750660serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g07440NANA3+3755892..3756656Vip1 protein, putative, expressed
LOC_Os03g07450OsAffx.12765.1.S1_x_at11/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07450OsAffx.18415.1.S1_x_at4/113+3763394..3766044DNA-binding protein, putative, expressed
LOC_Os03g07460OsAffx.25007.2.S1_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.2.S1_s_at11/113+3766797..3767501hypothetical protein
LOC_Os03g07460OsAffx.25007.1.S1_at6/113+3766797..3767501hypothetical protein
LOC_Os03g07470OsAffx.3164.1.S1_at11/113+3773693..3774661Glutaredoxin family protein
LOC_Os03g07480Os.4704.1.S1_at11/113+3776807..3783243sucrose transporter, putative, expressed
LOC_Os03g07490NANA3+3786704..3786910hypothetical protein
LOC_Os03g07500Os.45967.1.A1_at1/113+3789494..3789889hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009653biological_processmorphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12765.1.S1_x_at--541--3411Chr03:3764027..3764051 (25 bp)
CAGCACTTCCACTGATCGATCGATC
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--45--9391Chr03:3764008..3764032 (25 bp)
TCGATCCATGGATCCAACCAACCAA
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--1065--9571Chr03:3763955..3763979 (25 bp)
TCTTGCAGTGATGAAGCGATCGACA
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--271--2591Chr03:3763909..3763933 (25 bp)
AACGATGATCACACACCAACGCAAG
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--519--1851Chr03:3763891..3763915 (25 bp)
ACGCAAGCGCATGCACGTGTGTGGA
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--555--7511Chr03:3763871..3763895 (25 bp)
GTGGAAGATTCAGACGCATGCATTT
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--804--5792Chr08:27130360..27130379 (20 bp)
GACGCATGCATTTGGATTAATTCTT
NONE
OsAffx.12765.1.S1_x_at--64--651Chr03:3763749..3763773 (25 bp)
ATGCATTGAATTTTTCTCTTGGGTT
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--967--7771Chr03:3763518..3763542 (25 bp)
GGTGCATGGTGATTCTTCTTTCTTC
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--1109--10551Chr03:3763499..3763523 (25 bp)
TTCTTCCCCTAATCTGTGTGGATCA
LOC_Os03g07450
OsAffx.12765.1.S1_x_at--2--8671Chr03:3763483..3763507 (25 bp)
TGTGGATCATGTCCCTGTGTTGAGA
LOC_Os03g07450
Target Sequence 
CAGCACTTCCACTGATCGATCGATCCATGGATCCAACCAACCAACCAAACAACCATTGGCAACAACAAACTATCTTGCAG
TGATGAAGCGATCGACAGTATGTACGGGGTGATGAATTAACGATGATCACACACCAACGCAAGCGCATGCACGTGTGTGG
AAGATTCAGACGCATGCATTTGGATTAATTCTTGGAGAGATCGAGCAAGCTTAATTGGGAAGAACAATGAGAAGGTTGTG
TATGATGATGATGCTAGCTACGAGTATTGAGGTGATGAATGCATTGAATTTTTCTCTTGGGTTTGAAGAGGATATCGAAT
CGAAGGAACTTGTAGATGAATAAGCGAGTGAGATGGAACGACGTACGTAGGGTTAGATTTTGGAGTTCAGTAGTAGTATA
TTCTGTCACTTTTTATTTATTTTTTTTATTTATTGGGTTCTTATTTTTTCCCCTTTTTCTTTACATACATAAATTTGTGA
ACTTTGTGAGGCAGTGTTTGTTGTGTATAGGTGCATGGTGATTCTTCTTTCTTCCCCTAATCTGTGTGGATCATGTCCCT
GTGTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12765.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis